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Reviewed, UniProtKB/Swiss-Prot Q6NYL3 (ECHP_DANRE)

Last modified January 19, 2010. Version 57. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

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Names and origin

Protein namesRecommended name:
    Peroxisomal bifunctional enzyme
      Short name=PBE
      Short name=PBFE
Including the following 2 domains:
    1- Recommended name:
            Enoyl-CoA hydratase/3,2-trans-enoyl-CoA isomerase
              EC=4.2.1.17
              EC=5.3.3.8
    2- Recommended name:
            3-hydroxyacyl-CoA dehydrogenase
              EC=1.1.1.35
Gene names
Name: ehhadh
Synonyms: echd
ORF Names: si:dkeyp-30d5.2, zgc:77526
OrganismDanio rerio (Zebrafish) (Brachydanio rerio)
Taxonomic identifier7955 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Actinopterygii › Neopterygii › Teleostei › Ostariophysi › Cypriniformes › Cyprinidae › Danio

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Protein attributes

Sequence length718 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at transcript level.

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General annotation (Comments)

Catalytic activity

(3S)-3-hydroxyacyl-CoA = trans-2(or 3)-enoyl-CoA + H2O.

(3Z)-dodec-3-enoyl-CoA = (2E)-dodec-2-enoyl-CoA.

(S)-3-hydroxyacyl-CoA + NAD+ = 3-oxoacyl-CoA + NADH.

Pathway

Lipid metabolism; fatty acid beta-oxidation.

Subunit structure

Monomer By similarity.

Subcellular location

Peroxisome By similarity.

Sequence similarities

In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family.

In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.

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Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Initiator methionine11Removed By similarity
Chain2 – 718717Peroxisomal bifunctional enzyme
PRO_0000353182

Regions

Region2 – 280279Enoyl-CoA hydratase / isomerase
Region281 – 5672873-hydroxyacyl-CoA dehydrogenase
Motif716 – 7183Microbody targeting signal By similarity

Sites

Binding site1001Substrate; via amide nitrogen By similarity
Site1231Important for catalytic activity By similarity

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Sequences

Sequence LengthMass (Da)Tools
Q6NYL3-1 [UniParc].

Last modified July 5, 2004. Version 1.
Checksum: EA4DC2FDDCAE95B1

FASTA71878,508
        10         20         30         40         50         60 
MARYELVKRS VALITLTNPP VNALSSAVRH AISKTMERAL SDPKVTAVVI CGENGRFCGG 

        70         80         90        100        110        120 
ADIREFAGPL RGPPLVPLLD AIEAGEKPVV AAIEGVALGG GFELALVCHY RIAHYKARLG 

       130        140        150        160        170        180 
LPEVTLGILP AAGGTQRLPR LIGIPAALEL ITTGRHVSAQ EALKLGMVDQ VTEQNTCEVA 

       190        200        210        220        230        240 
LEFALKAVGK PLSSRRLSML TTPCPPGLDG IFEAATMQVQ KKARGVMAPL ACVQAVRAAT 

       250        260        270        280        290        300 
LPYSEGIKRE GELMATLFSS GQAQALQYSF FAQRTAEKWT LPSGAQWNNS KPREIQSAAV 

       310        320        330        340        350        360 
IGLGTMGRGI VVSLARVGIS VIAVESEKKL LETGRQMVIG MLERDAKRRG VSASLNLLKF 

       370        380        390        400        410        420 
SLSLQDLKDV DLVIEAVFED MALKKQIFRE LSRVCRPATL LCSNTSGLDV DALADVTDRP 

       430        440        450        460        470        480 
QLVAGMHFFS PAHVMKLLEV VCGPRSSKEA IATAMSLGKR MGKVSVAVGN CPGFVGNRML 

       490        500        510        520        530        540 
MPYLEQATFL LEEGATPQQI DKALEDFGFA MGVFRMSDLA GLDVGWRVRK ESGLTGPDVD 

       550        560        570        580        590        600 
PKDPPRRRQG RKYCPIPDMV CQQGRFGQKT GRGWYMYDKP GDTNAKPDPL IQNLLETYRS 

       610        620        630        640        650        660 
RYGIQPRKIT DQEIIERCLF ALANEGFRIL KDKIAGQPED IDVIYLFGYG FPRHRGGPMF 

       670        680        690        700        710 
YASMVGLERV LERLEYYHHA LPDVPHLEPS PLLKKLVARG SPPIQKWREH IKSMHSHL

« Hide

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References

[1]The Danio rerio sequencing project at the Sanger Institute
Submitted (FEB-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Tuebingen.
[2]NIH - Zebrafish Gene Collection (ZGC) project
Submitted (FEB-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Kidney.

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Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CR936497 Genomic DNA. Translation: CAP19438.1.
BC066545 mRNA. Translation: AAH66545.1.
IPIIPI00502496.
RefSeqNP_996951.1.
UniGeneDr.80045

3D structure databases

HSSPHSSP built from PDB template 1ZCJ based on UniProtKB P07896.
SMRQ6NYL3. Positions 4-701, 260-709.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ6NYL3.

Genome annotation databases

EnsemblENSDART00000102434; ENSDARP00000093211; ENSDARG00000070029; Danio rerio. [Genome view]
GeneID100000859.
KEGGdre:100000859.

Organism-specific databases

CTD100000859.
ZFINZDB-GENE-040426-2581. ehhadh.

Phylogenomic databases

eggNOGfiNOG08996.
HOGENOMHBG691737.
HOVERGENQ6NYL3.
InParanoidQ6NYL3.
OMAPYYNQTY.
OrthoDBEOG93JFQ9.
PhylomeDBQ6NYL3.

Gene expression databases

ArrayExpressQ6NYL3.
BgeeQ6NYL3.

Family and domain databases

InterProIPR006180. 3-OHacyl-CoA_DH_CS.
IPR006176. 3-OHacyl-CoA_DH_NAD-bd.
IPR006108. 3HC_DH_C.
IPR008927. 6-PGluconate_DH_C-like.
IPR001753. Crotonase_core.
IPR013328. DH_multihelical.
IPR018376. Enoyl-CoA_hyd/isom_CS.
IPR016040. NAD(P)-bd_dom.
[Graphical view]
Gene3DG3DSA:3.40.50.720. NAD(P)-bd. 1 hit.
G3DSA:1.10.1040.10. Opine_DH. 2 hits.
PfamPF00725. 3HCDH. 2 hits.
PF02737. 3HCDH_N. 1 hit.
PF00378. ECH. 1 hit.
[Graphical view]
PROSITEPS00067. 3HCDH. 1 hit.
PS00166. ENOYL_COA_HYDRATASE. 1 hit.
[Graphical view]
ProtoNetSearch...

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Entry information

Entry nameECHP_DANRE
AccessionPrimary (citable) accession number: Q6NYL3
Entry history
Integrated into UniProtKB/Swiss-Prot: November 4, 2008
Last sequence update: July 5, 2004
Last modified: January 19, 2010
This is version 57 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectZebrafish annotation project

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Relevant documents

PATHWAY comments

Index of metabolic and biosynthesis pathways

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents