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Q6NWC1 (Q6NWC1_DANRE) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 65. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names

Vdac1 protein EMBL AAI60655.1

Voltage-dependent anion channel 1 EMBL AAH67647.1
Gene names
Name:vdac1 ZFIN ZDB-GENE-030131-6514 Ensembl ENSDARP00000066372 EMBL AAH67647.1
Synonyms:VDAC1 EMBL AAQ97862.1
OrganismDanio rerio (Zebrafish) (Brachydanio rerio) [Reference proteome] EMBL AAH67647.1
Taxonomic identifier7955 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio

Protein attributes

Sequence length283 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Ontologies

Keywords
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Cellular_componentmitochondrial outer membrane

Inferred from electronic annotation. Source: InterPro

   Molecular_functionvoltage-gated anion channel activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q6NWC1 [UniParc].

Last modified July 5, 2004. Version 1.
Checksum: 0FBFA923329C4EB3

FASTA28330,626
        10         20         30         40         50         60 
MAVPPTYVDL GKSARDIFTK GYGFGLIKLD LKTRSENGLE FKSSGSANTE TSKVAGTLET 

        70         80         90        100        110        120 
KYKWAEHGLT FTEKWNTDNT LGTEITLEDQ LTKGLKLTFD SSFSPNTGKK SGKIKSSYQR 

       130        140        150        160        170        180 
EHINLGCDVD YDINGTAVHG ALVLGLDGWL AGYQMTFEAG RNRITQSNFA VGYKTDEFQL 

       190        200        210        220        230        240 
HTNVNDGTEF GGSIYQKVND NLETAVNLAW TAGNSNTRFG IAAKYQIDSD AAFSAKVNNS 

       250        260        270        280 
SLVGLGYTQT LKPGIKLTLS ALLDGKNINA GGHKMGLGLE FEA 

« Hide

References

« Hide 'large scale' references
[1]"Hematopoietic gene expression profile in zebrafish kidney marrow."
Song H.-D., Sun X.-J., Deng M., Zhang G.-W., Zhou Y., Wu X.-Y., Sheng Y., Chen Y., Ruan Z., Jiang C.-L., Fan H.-Y., Zon L.I., Kanki J.P., Liu T.X., Look A.T., Chen Z.
Proc. Natl. Acad. Sci. U.S.A. 101:16240-16245(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Tissue: Kidney marrow EMBL AAQ97862.1.
[2]NIH - Zebrafish Gene Collection (ZGC) project
Submitted (MAR-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Embryo EMBL AAH67647.1.
[3]NIH - Zebrafish Gene Collection (ZGC) project
Submitted (MAR-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Kidney EMBL AAI60655.1.
[4]Ensembl
Submitted (FEB-2012) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Tuebingen Ensembl ENSDARP00000066372.
[5]"The zebrafish reference genome sequence and its relationship to the human genome."
Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C., Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L., McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C., Koch R., Rauch G.J. expand/collapse author list , White S., Chow W., Kilian B., Quintais L.T., Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T., Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F., Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H., Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M., Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J., Clee C., Oliver K., Clark R., Riddle C., Eliott D., Threadgold G., Harden G., Ware D., Mortimer B., Kerry G., Heath P., Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J., Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P., Barker N., Stevens C., Harley J., Holt K., Panagiotidis G., Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D., Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K., Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C., Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J., Murnane C., Gray E., Humphries M., Sycamore N., Barker D., Saunders D., Wallis J., Babbage A., Hammond S., Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A., Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J., Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E., Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D., Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z., Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J., Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C., Yang F., Carter N.P., Harrow J., Ning Z., Herrero J., Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C., Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H., Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J., Stemple D.L.
Nature 496:498-503(2013) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Tuebingen Ensembl ENSDARP00000066372.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CU929234 Genomic DNA. No translation available.
BC067647 mRNA. Translation: AAH67647.1.
BC160655 mRNA. Translation: AAI60655.1.
AY398429 mRNA. Translation: AAQ97862.1.
RefSeqNP_001001404.1. NM_001001404.1.
UniGeneDr.132832.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING7955.ENSDARP00000066372.

Protocols and materials databases

DNASU334582.
StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSDART00000066373; ENSDARP00000066372; ENSDARG00000045132.
GeneID334582.
KEGGdre:334582.

Organism-specific databases

CTD7416.
ZFINZDB-GENE-030131-6514. vdac1.

Phylogenomic databases

eggNOGNOG243169.
GeneTreeENSGT00390000011336.
HOGENOMHOG000188277.
HOVERGENHBG054036.
InParanoidQ6NWC1.
KOK05862.
OMATKTENDI.
OrthoDBEOG7P8P8G.
TreeFamTF315091.

Family and domain databases

Gene3D2.40.160.10. 1 hit.
InterProIPR023614. Porin_dom.
IPR001925. Porin_Euk.
IPR027246. Porin_Euk/Tom40.
[Graphical view]
PfamPF01459. Porin_3. 1 hit.
[Graphical view]
PRINTSPR00185. EUKARYTPORIN.
PROSITEPS00558. EUKARYOTIC_PORIN. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio20810461.
PROQ6NWC1.

Entry information

Entry nameQ6NWC1_DANRE
AccessionPrimary (citable) accession number: Q6NWC1
Entry history
Integrated into UniProtKB/TrEMBL: July 5, 2004
Last sequence update: July 5, 2004
Last modified: May 14, 2014
This is version 65 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)