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Q6NUI6

- CHADL_HUMAN

UniProt

Q6NUI6 - CHADL_HUMAN

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Protein

Chondroadherin-like protein

Gene
CHADL, SLRR4B
Organism
Homo sapiens (Human)
Status
Reviewed - Annotation score: 3 out of 5 - Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Chondroadherin-like protein
Gene namesi
Name:CHADL
Synonyms:SLRR4B
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640: Chromosome 22

Organism-specific databases

HGNCiHGNC:25165. CHADL.

Subcellular locationi

GO - Cellular componenti

  1. proteinaceous extracellular matrix Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Extracellular matrix, Secreted

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA162382224.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 3030 Reviewed predictionAdd
BLAST
Chaini31 – 762732Chondroadherin-like proteinPRO_0000299548Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi52 – 521N-linked (GlcNAc...) Reviewed prediction
Disulfide bondi396 ↔ 411 By similarity
Glycosylationi626 – 6261N-linked (GlcNAc...) Reviewed prediction
Disulfide bondi679 ↔ 722 By similarity
Disulfide bondi681 ↔ 701 By similarity

Keywords - PTMi

Disulfide bond, Glycoprotein

Proteomic databases

PaxDbiQ6NUI6.
PRIDEiQ6NUI6.

Expressioni

Gene expression databases

ArrayExpressiQ6NUI6.
BgeeiQ6NUI6.
CleanExiHS_CHADL.
GenevestigatoriQ6NUI6.

Organism-specific databases

HPAiHPA005696.
HPA024654.

Interactioni

Protein-protein interaction databases

STRINGi9606.ENSP00000216241.

Structurei

3D structure databases

ProteinModelPortaliQ6NUI6.
SMRiQ6NUI6. Positions 31-712.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini31 – 6232LRRNT 1Add
BLAST
Repeati87 – 10822LRR 1Add
BLAST
Repeati111 – 13222LRR 2Add
BLAST
Repeati135 – 15622LRR 3Add
BLAST
Repeati159 – 18022LRR 4Add
BLAST
Repeati183 – 20422LRR 5Add
BLAST
Repeati207 – 22822LRR 6Add
BLAST
Repeati231 – 25222LRR 7Add
BLAST
Repeati255 – 27622LRR 8Add
BLAST
Repeati279 – 30022LRR 9Add
BLAST
Domaini310 – 35950LRRCT 1Add
BLAST
Domaini387 – 42539LRRNT 2Add
BLAST
Repeati426 – 44722LRR 10Add
BLAST
Repeati450 – 47122LRR 11Add
BLAST
Repeati474 – 49522LRR 12Add
BLAST
Repeati498 – 51922LRR 13Add
BLAST
Repeati522 – 54322LRR 14Add
BLAST
Repeati546 – 56621LRR 15Add
BLAST
Repeati570 – 59122LRR 16Add
BLAST
Repeati594 – 61522LRR 17Add
BLAST
Repeati619 – 64022LRR 18Add
BLAST
Repeati644 – 66522LRR 19Add
BLAST
Domaini675 – 72450LRRCT 2Add
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi109 – 325217Leu-richAdd
BLAST
Compositional biasi364 – 3707Poly-Glu

Sequence similaritiesi

Contains 2 LRRCT domains.
Contains 2 LRRNT domains.

Keywords - Domaini

Leucine-rich repeat, Repeat, Signal

Phylogenomic databases

eggNOGiNOG318740.
HOGENOMiHOG000111626.
HOVERGENiHBG095510.
InParanoidiQ6NUI6.
OMAiQDNAVDR.
PhylomeDBiQ6NUI6.
TreeFamiTF337463.

Family and domain databases

InterProiIPR000483. Cys-rich_flank_reg_C.
IPR001611. Leu-rich_rpt.
IPR003591. Leu-rich_rpt_typical-subtyp.
IPR000372. LRR-contain_N.
[Graphical view]
PfamiPF13855. LRR_8. 7 hits.
[Graphical view]
SMARTiSM00369. LRR_TYP. 4 hits.
SM00082. LRRCT. 2 hits.
SM00013. LRRNT. 2 hits.
[Graphical view]
PROSITEiPS51450. LRR. 18 hits.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

This entry describes 2 isoformsi produced by alternative splicing. Align

Isoform 1 (identifier: Q6NUI6-1) [UniParc]FASTAAdd to Basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

MEGPRSSTHV PLVLPLLVLL LLAPARQAAA QRCPQACICD NSRRHVACRY    50
QNLTEVPDAI PELTQRLDLQ GNLLKVIPAA AFQGVPHLTH LDLRHCEVEL 100
VAEGAFRGLG RLLLLNLASN HLRELPQEAL DGLGSLRRLE LEGNALEELR 150
PGTFGALGAL ATLNLAHNAL VYLPAMAFQG LLRVRWLRLS HNALSVLAPE 200
ALAGLPALRR LSLHHNELQA LPGPVLSQAR GLARLELGHN PLTYAGEEDG 250
LALPGLRELL LDGGALQALG PRAFAHCPRL HTLDLRGNQL DTLPPLQGPG 300
QLRRLRLQGN PLWCGCQARP LLEWLARARV RSDGACQGPR RLRGEALDAL 350
RPWDLRCPGD AAQEEEELEE RAVAGPRAPP RGPPRGPGEE RAVAPCPRAC 400
VCVPESRHSS CEGCGLQAVP RGFPSDTQLL DLRRNHFPSV PRAAFPGLGH 450
LVSLHLQHCG IAELEAGALA GLGRLIYLYL SDNQLAGLSA AALEGAPRLG 500
YLYLERNRFL QVPGAALRAL PSLFSLHLQD NAVDRLAPGD LGRTRALRWV 550
YLSGNRITEV SLGALGPARE LEKLHLDRNQ LREVPTGALE GLPALLELQL 600
SGNPLRALRD GAFQPVGRSL QHLFLNSSGL EQICPGAFSG LGPGLQSLHL 650
QKNQLRALPA LPSLSQLELI DLSSNPFHCD CQLLPLHRWL TGLNLRVGAT 700
CATPPNARGQ RVKAAAAVFE DCPGWAARKA KRTPASRPSA RRTPIKGRQC 750
GADKVGKEKG RL 762
Length:762
Mass (Da):82,388
Last modified:September 11, 2007 - v2
Checksum:iBE01DF94D3408A70
GO
Isoform 2 (identifier: Q6NUI6-2) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     662-737: Missing.

Note: No experimental confirmation available.

Show »
Length:686
Mass (Da):74,155
Checksum:iC7BD512ECAC83CC9
GO

Sequence cautioni

The sequence AAH19839.1 differs from that shown. Reason: Frameshift at position 504.
The sequence AAH68590.1 differs from that shown. Reason: Erroneous initiation.

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti710 – 7101Q → R.
Corresponds to variant rs9619955 [ dbSNP | Ensembl ].
VAR_059805
Natural varianti721 – 7211D → N.
Corresponds to variant rs9619954 [ dbSNP | Ensembl ].
VAR_061805

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei662 – 73776Missing in isoform 2. VSP_027735Add
BLAST

Sequence conflict

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti11 – 111P → T in AAH40188. 1 Publication
Sequence conflicti30 – 301A → T in AAH40188. 1 Publication
Sequence conflicti148 – 1481E → G in AAH40188. 1 Publication
Sequence conflicti424 – 4241P → R in AAH68590. 1 Publication
Sequence conflicti478 – 4781L → V in AAH40188. 1 Publication
Sequence conflicti508 – 5081R → S in AAH48421. 1 Publication
Sequence conflicti529 – 5291Q → H in AAH68590. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AL035681 Genomic DNA. Translation: CAI22653.1.
CH471095 Genomic DNA. Translation: EAW60419.1.
BC012882 mRNA. Translation: AAH12882.1.
BC019839 mRNA. Translation: AAH19839.1. Frameshift.
BC040188 mRNA. Translation: AAH40188.1.
BC048421 mRNA. Translation: AAH48421.1.
BC068590 mRNA. Translation: AAH68590.1. Different initiation.
CCDSiCCDS46715.1. [Q6NUI6-1]
RefSeqiNP_612490.1. NM_138481.1. [Q6NUI6-1]
UniGeneiHs.344488.

Genome annotation databases

EnsembliENST00000216241; ENSP00000216241; ENSG00000100399. [Q6NUI6-1]
GeneIDi150356.
KEGGihsa:150356.
UCSCiuc003azq.4. human. [Q6NUI6-1]
uc010gyj.3. human. [Q6NUI6-2]

Polymorphism databases

DMDMi158563972.

Keywords - Coding sequence diversityi

Alternative splicing, Polymorphism

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AL035681 Genomic DNA. Translation: CAI22653.1 .
CH471095 Genomic DNA. Translation: EAW60419.1 .
BC012882 mRNA. Translation: AAH12882.1 .
BC019839 mRNA. Translation: AAH19839.1 . Frameshift.
BC040188 mRNA. Translation: AAH40188.1 .
BC048421 mRNA. Translation: AAH48421.1 .
BC068590 mRNA. Translation: AAH68590.1 . Different initiation.
CCDSi CCDS46715.1. [Q6NUI6-1 ]
RefSeqi NP_612490.1. NM_138481.1. [Q6NUI6-1 ]
UniGenei Hs.344488.

3D structure databases

ProteinModelPortali Q6NUI6.
SMRi Q6NUI6. Positions 31-712.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 9606.ENSP00000216241.

Polymorphism databases

DMDMi 158563972.

Proteomic databases

PaxDbi Q6NUI6.
PRIDEi Q6NUI6.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENST00000216241 ; ENSP00000216241 ; ENSG00000100399 . [Q6NUI6-1 ]
GeneIDi 150356.
KEGGi hsa:150356.
UCSCi uc003azq.4. human. [Q6NUI6-1 ]
uc010gyj.3. human. [Q6NUI6-2 ]

Organism-specific databases

CTDi 150356.
GeneCardsi GC22M041625.
HGNCi HGNC:25165. CHADL.
HPAi HPA005696.
HPA024654.
neXtProti NX_Q6NUI6.
PharmGKBi PA162382224.
GenAtlasi Search...

Phylogenomic databases

eggNOGi NOG318740.
HOGENOMi HOG000111626.
HOVERGENi HBG095510.
InParanoidi Q6NUI6.
OMAi QDNAVDR.
PhylomeDBi Q6NUI6.
TreeFami TF337463.

Miscellaneous databases

GenomeRNAii 150356.
NextBioi 86414.
PROi Q6NUI6.

Gene expression databases

ArrayExpressi Q6NUI6.
Bgeei Q6NUI6.
CleanExi HS_CHADL.
Genevestigatori Q6NUI6.

Family and domain databases

InterProi IPR000483. Cys-rich_flank_reg_C.
IPR001611. Leu-rich_rpt.
IPR003591. Leu-rich_rpt_typical-subtyp.
IPR000372. LRR-contain_N.
[Graphical view ]
Pfami PF13855. LRR_8. 7 hits.
[Graphical view ]
SMARTi SM00369. LRR_TYP. 4 hits.
SM00082. LRRCT. 2 hits.
SM00013. LRRNT. 2 hits.
[Graphical view ]
PROSITEi PS51450. LRR. 18 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The DNA sequence of human chromosome 22."
    Dunham I., Hunt A.R., Collins J.E., Bruskiewich R., Beare D.M., Clamp M., Smink L.J., Ainscough R., Almeida J.P., Babbage A.K., Bagguley C., Bailey J., Barlow K.F., Bates K.N., Beasley O.P., Bird C.P., Blakey S.E., Bridgeman A.M.
    , Buck D., Burgess J., Burrill W.D., Burton J., Carder C., Carter N.P., Chen Y., Clark G., Clegg S.M., Cobley V.E., Cole C.G., Collier R.E., Connor R., Conroy D., Corby N.R., Coville G.J., Cox A.V., Davis J., Dawson E., Dhami P.D., Dockree C., Dodsworth S.J., Durbin R.M., Ellington A.G., Evans K.L., Fey J.M., Fleming K., French L., Garner A.A., Gilbert J.G.R., Goward M.E., Grafham D.V., Griffiths M.N.D., Hall C., Hall R.E., Hall-Tamlyn G., Heathcott R.W., Ho S., Holmes S., Hunt S.E., Jones M.C., Kershaw J., Kimberley A.M., King A., Laird G.K., Langford C.F., Leversha M.A., Lloyd C., Lloyd D.M., Martyn I.D., Mashreghi-Mohammadi M., Matthews L.H., Mccann O.T., Mcclay J., Mclaren S., McMurray A.A., Milne S.A., Mortimore B.J., Odell C.N., Pavitt R., Pearce A.V., Pearson D., Phillimore B.J.C.T., Phillips S.H., Plumb R.W., Ramsay H., Ramsey Y., Rogers L., Ross M.T., Scott C.E., Sehra H.K., Skuce C.D., Smalley S., Smith M.L., Soderlund C., Spragon L., Steward C.A., Sulston J.E., Swann R.M., Vaudin M., Wall M., Wallis J.M., Whiteley M.N., Willey D.L., Williams L., Williams S.A., Williamson H., Wilmer T.E., Wilming L., Wright C.L., Hubbard T., Bentley D.R., Beck S., Rogers J., Shimizu N., Minoshima S., Kawasaki K., Sasaki T., Asakawa S., Kudoh J., Shintani A., Shibuya K., Yoshizaki Y., Aoki N., Mitsuyama S., Roe B.A., Chen F., Chu L., Crabtree J., Deschamps S., Do A., Do T., Dorman A., Fang F., Fu Y., Hu P., Hua A., Kenton S., Lai H., Lao H.I., Lewis J., Lewis S., Lin S.-P., Loh P., Malaj E., Nguyen T., Pan H., Phan S., Qi S., Qian Y., Ray L., Ren Q., Shaull S., Sloan D., Song L., Wang Q., Wang Y., Wang Z., White J., Willingham D., Wu H., Yao Z., Zhan M., Zhang G., Chissoe S., Murray J., Miller N., Minx P., Fulton R., Johnson D., Bemis G., Bentley D., Bradshaw H., Bourne S., Cordes M., Du Z., Fulton L., Goela D., Graves T., Hawkins J., Hinds K., Kemp K., Latreille P., Layman D., Ozersky P., Rohlfing T., Scheet P., Walker C., Wamsley A., Wohldmann P., Pepin K., Nelson J., Korf I., Bedell J.A., Hillier L.W., Mardis E., Waterston R., Wilson R., Emanuel B.S., Shaikh T., Kurahashi H., Saitta S., Budarf M.L., McDermid H.E., Johnson A., Wong A.C.C., Morrow B.E., Edelmann L., Kim U.J., Shizuya H., Simon M.I., Dumanski J.P., Peyrard M., Kedra D., Seroussi E., Fransson I., Tapia I., Bruder C.E., O'Brien K.P., Wilkinson P., Bodenteich A., Hartman K., Hu X., Khan A.S., Lane L., Tilahun Y., Wright H.
    Nature 402:489-495(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2).
    Tissue: Brain.

Entry informationi

Entry nameiCHADL_HUMAN
AccessioniPrimary (citable) accession number: Q6NUI6
Secondary accession number(s): Q05CY2
, Q4G0S0, Q5JY13, Q86XY1, Q96E60
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 11, 2007
Last sequence update: September 11, 2007
Last modified: July 9, 2014
This is version 83 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 22
    Human chromosome 22: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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