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Q6NUB7

- ZRN1B_XENLA

UniProt

Q6NUB7 - ZRN1B_XENLA

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Protein

Ubiquitin thioesterase zranb1-B

Gene
zranb1-b
Organism
Xenopus laevis (African clawed frog)
Status
Reviewed - Annotation score: 4 out of 5 - Experimental evidence at transcript leveli

Functioni

Specifically hydrolyzes 'Lys-29'-linked and 'Lys-33'-linked diubiquitin. Also cleaves 'Lys-63'-linked chains, but with 40-fold less efficiency compared to 'Lys-29'-linked ones. Positive regulator of the Wnt signaling pathway that deubiquitinates APC protein, a negative regulator of Wnt-mediated transcription. May play a role in the regulation of cell morphology and cytoskeletal organization. Required in the stress fiber dynamics and cell migration By similarity.

Catalytic activityi

Thiol-dependent hydrolysis of ester, thioester, amide, peptide and isopeptide bonds formed by the C-terminal Gly of ubiquitin (a 76-residue protein attached to proteins as an intracellular targeting signal).

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei436 – 4361Nucleophile By similarity
Active sitei578 – 5781Proton acceptor By similarity

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri3 – 3331RanBP2-type 1Add
BLAST
Zinc fingeri79 – 10830RanBP2-type 2Add
BLAST
Zinc fingeri143 – 17331RanBP2-type 3Add
BLAST

GO - Molecular functioni

  1. ubiquitin-specific protease activity Source: UniProtKB
  2. ubiquitin thiolesterase activity Source: UniProtKB
  3. zinc ion binding Source: InterPro

GO - Biological processi

  1. cell migration Source: UniProtKB
  2. cytoskeleton organization Source: UniProtKB
  3. positive regulation of Wnt signaling pathway Source: UniProtKB
  4. protein K29-linked deubiquitination Source: UniProtKB
  5. protein K33-linked deubiquitination Source: UniProtKB
  6. protein K63-linked deubiquitination Source: UniProtKB
  7. regulation of cell morphogenesis Source: UniProtKB
  8. Wnt signaling pathway Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Hydrolase, Protease, Thiol protease

Keywords - Biological processi

Ubl conjugation pathway, Wnt signaling pathway

Keywords - Ligandi

Metal-binding, Zinc

Protein family/group databases

MEROPSiC64.004.

Names & Taxonomyi

Protein namesi
Recommended name:
Ubiquitin thioesterase zranb1-B (EC:3.4.19.12)
Alternative name(s):
Zinc finger Ran-binding domain-containing protein 1B
Gene namesi
Name:zranb1-b
OrganismiXenopus laevis (African clawed frog)
Taxonomic identifieri8355 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiAmphibiaBatrachiaAnuraPipoideaPipidaeXenopodinaeXenopusXenopus

Organism-specific databases

XenbaseiXB-GENE-6252281. zranb1.

Subcellular locationi

Cytoplasm By similarity. Nucleus By similarity

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB
  2. nucleus Source: UniProtKB
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm, Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 701701Ubiquitin thioesterase zranb1-BPRO_0000361557Add
BLAST

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati253 – 28331ANK 1Add
BLAST
Repeati306 – 33328ANK 2Add
BLAST
Domaini425 – 585161OTUAdd
BLAST

Domaini

The OTU domain mediates the deubiquitinating activity By similarity.
The RanBP2-type zinc fingers mediate the specific interaction with 'Lys-63'-linked ubiquitin By similarity.

Sequence similaritiesi

Belongs to the peptidase C64 family.
Contains 2 ANK repeats.
Contains 1 OTU domain.

Keywords - Domaini

ANK repeat, Repeat, Zinc-finger

Phylogenomic databases

HOVERGENiHBG058978.
KOiK11862.

Family and domain databases

InterProiIPR003323. OTU.
IPR001876. Znf_RanBP2.
[Graphical view]
PfamiPF02338. OTU. 1 hit.
PF00641. zf-RanBP. 2 hits.
[Graphical view]
SMARTiSM00547. ZnF_RBZ. 3 hits.
[Graphical view]
PROSITEiPS50802. OTU. 1 hit.
PS01358. ZF_RANBP2_1. 3 hits.
PS50199. ZF_RANBP2_2. 3 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q6NUB7-1 [UniParc]FASTAAdd to Basket

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MTEDGIKWAC EYCTFENWPS AIKCTMCRAP RPSGAIITEE PFKNRTPDVG    50
SMEREIGSPL ICPDSSARPR VKSSYSMETS SKWSCQICTY LNWPRAIRCT 100
QCLSQRRTRS PTESPQSSGS GLRSIPGPID PCEEYNDRNK LNIKGQHWTC 150
SACTYENCAK AKKCVVCDHP TPNNMDAIEL ANTDEASSII NEQDRARWRG 200
GCSSSNSQRR SPPTSKRDSD MDFQRIELAG AVGSKEEFEL DLKKLKQIKN 250
RMRKTDWLFL NACVGVVEGD LSAVEAYKTS GGDIARQLSA DEVRLLNRPS 300
AFDVGYTLVH LSIRFQRQDM LAILLTEVAQ HAAKCIPAMV CPELTEQIRR 350
EIAASVHQRK GDFACYFLTD LVTFTLPADI EDLPPTVQEK LFDEVLDRDV 400
QKELEEESPI INWSLELGTR LDSRLYALWN RTAGDCLLDS VLQATWGIYD 450
KDSVLRKALH DSLRDCSHWF YSRWKEWESW YSQSFGLHFS LREEQWQEDW 500
AFILSLASQP GASLEQTHIF VLAHILRRPI IVYGVKYYKS FRGETLGYTR 550
FQGVYLPLLW EQSFCWKSPI ALGYTRGHFS ALVAMENDGF DNRGAGANLN 600
TDDDVTVTFL PLVDSERKLL HVHFLSAQEL GNEDQQEKLL REWMDCCVTE 650
GGVLVAMQKS SRRRNHPLVT QMVEKWLDGY RQIRPCTALS DGEEDEDDED 700
E 701
Length:701
Mass (Da):79,950
Last modified:July 5, 2004 - v1
Checksum:iFDCD31885AC1A180
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BC068679 mRNA. Translation: AAH68679.1.
RefSeqiNP_001084698.1. NM_001091229.1.
UniGeneiXl.9866.

Genome annotation databases

GeneIDi414659.
KEGGixla:414659.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BC068679 mRNA. Translation: AAH68679.1 .
RefSeqi NP_001084698.1. NM_001091229.1.
UniGenei Xl.9866.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein family/group databases

MEROPSi C64.004.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 414659.
KEGGi xla:414659.

Organism-specific databases

CTDi 414659.
Xenbasei XB-GENE-6252281. zranb1.

Phylogenomic databases

HOVERGENi HBG058978.
KOi K11862.

Family and domain databases

InterProi IPR003323. OTU.
IPR001876. Znf_RanBP2.
[Graphical view ]
Pfami PF02338. OTU. 1 hit.
PF00641. zf-RanBP. 2 hits.
[Graphical view ]
SMARTi SM00547. ZnF_RBZ. 3 hits.
[Graphical view ]
PROSITEi PS50802. OTU. 1 hit.
PS01358. ZF_RANBP2_1. 3 hits.
PS50199. ZF_RANBP2_2. 3 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. NIH - Xenopus Gene Collection (XGC) project
    Submitted (APR-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Ovary.

Entry informationi

Entry nameiZRN1B_XENLA
AccessioniPrimary (citable) accession number: Q6NUB7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 20, 2009
Last sequence update: July 5, 2004
Last modified: May 14, 2014
This is version 54 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Documents

  1. Peptidase families
    Classification of peptidase families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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