Q6NSP3 (Q6NSP3_DANRE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Y box binding protein 1 EMBL AAH70000.1

Gene names

Name:

ybx1 ZFIN ZDB-GENE-000629-3

Organism

Danio rerio (Zebrafish) (Brachydanio rerio) EMBL AAH70000.1

Taxonomic identifier

7955 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Actinopterygii › Actinopteri › Neopterygii › Teleostei › Elopocephala › Clupeocephala › Otocephala › Ostariophysi › Otophysi › Cypriniphysi › Cypriniformes › Cyprinoidea › Cyprinidae › Danio

Protein attributes

Sequence length	310 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Sequence similarities

Contains 1 CSD (cold-shock) domain. RuleBase RU000407

Ontologies

Gene Ontology (GO)
Biological_process	regulation of transcription, DNA-dependent Inferred from electronic annotation. Source: InterPro
Molecular_function	DNA binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q6NSP3 [UniParc]. Last modified July 5, 2004. Version 1. Checksum: 60C9B71816ECF08C	FASTA	310	34,968
	10 20 30 40 50 60 MSSEAETQQP PQPAADAESP SSPAAAATAG DKKVIATKVL GTVKWFNVRN GYGFINRNDT 70 80 90 100 110 120 KEDVFVHQTA IKKNNPRKYL RSVGDGETVE FAVVEGEKGA EAANVTGPGG VPVQGSKYAA 130 140 150 160 170 180 DRNRYRRYPR RRAPPRDYQE NYQSDPEAEP REKREGAESA PEGEMQQQQR RPTYPGRRRY 190 200 210 220 230 240 PPYFVRRRYG RRPPYTNSQR GEMTEGGEGE ENQGGPDQGN KPMRQNYYRG FRPSRGPSRP 250 260 270 280 290 300 RPVRDGEEDK ENQSESGQNQ EPRQRRYRRN FNYRRRRPQT TKPQDGKDSK AADASADKSA 310 APEAEQGGAD

References

[1]	NIH - Zebrafish Gene Collection (ZGC) project Submitted (MAY-2004) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Tissue: Embryo EMBL AAH70000.1.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	BC070000 mRNA. Translation: AAH70000.1.
IPI	IPI00837236.
UniGene	Dr.59019.
3D structure databases
ProteinModelPortal	Q6NSP3.
SMR	Q6NSP3. Positions 32-109.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Organism-specific databases
ZFIN	ZDB-GENE-000629-3. ybx1.
Phylogenomic databases
HOVERGEN	HBG008757.
InParanoid	Q6NSP3.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR019844. Cold-shock_CS. IPR011129. Cold_shock_prot. IPR002059. CSP_DNA-bd. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF00313. CSD. 1 hit. [Graphical view]
PRINTS	PR00050. COLDSHOCK.
SMART	SM00357. CSP. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
PROSITE	PS00352. COLD_SHOCK. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q6NSP3_DANRE

Accession

Primary (citable) accession number: Q6NSP3

Entry history

Integrated into UniProtKB/TrEMBL:	July 5, 2004
Last sequence update:	July 5, 2004
Last modified:	April 3, 2013
This is version 75 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)