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Q6NRQ7

- SSU72_XENLA

UniProt

Q6NRQ7 - SSU72_XENLA

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Protein

RNA polymerase II subunit A C-terminal domain phosphatase SSU72

Gene
ssu72
Organism
Xenopus laevis (African clawed frog)
Status
Reviewed - Annotation score: 2 out of 5 - Experimental evidence at transcript leveli

Functioni

May be involved in the C-terminal domain of RNA polymerase II dephosphorylation, RNA processing and termination By similarity.

Catalytic activityi

[a protein]-serine/threonine phosphate + H2O = [a protein]-serine/threonine + phosphate.

GO - Molecular functioni

  1. phosphoprotein phosphatase activity Source: UniProtKB-KW

GO - Biological processi

  1. mRNA processing Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Hydrolase, Protein phosphatase

Keywords - Biological processi

mRNA processing

Names & Taxonomyi

Protein namesi
Recommended name:
RNA polymerase II subunit A C-terminal domain phosphatase SSU72 (EC:3.1.3.16)
Short name:
CTD phosphatase SSU72
Gene namesi
Name:ssu72
OrganismiXenopus laevis (African clawed frog)
Taxonomic identifieri8355 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiAmphibiaBatrachiaAnuraPipoideaPipidaeXenopodinaeXenopusXenopus

Organism-specific databases

XenbaseiXB-GENE-5725684. ssu72.

Subcellular locationi

Nucleus By similarity. Cytoplasm By similarity
Note: Predominantly in the cytosol By similarity.

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
  2. nucleus Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm, Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 194194RNA polymerase II subunit A C-terminal domain phosphatase SSU72PRO_0000330017Add
BLAST

Structurei

3D structure databases

ProteinModelPortaliQ6NRQ7.

Family & Domainsi

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili160 – 18627 Reviewed predictionAdd
BLAST

Sequence similaritiesi

Belongs to the SSU72 phosphatase family.

Keywords - Domaini

Coiled coil

Phylogenomic databases

HOVERGENiHBG059831.
KOiK15544.

Family and domain databases

InterProiIPR006811. RNA_pol_II_suA.
[Graphical view]
PANTHERiPTHR20383. PTHR20383. 1 hit.
PfamiPF04722. Ssu72. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q6NRQ7-1 [UniParc]FASTAAdd to Basket

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MPTAPLRVAV VCSSNQNRSM EAHNILSKRS FNVRSFGTGT HVKLPGPAPD    50
KPNVYDFKTT YEQMYSDLLK KDKELYTQNG ILHMLDRNRR IKPRPERFQN 100
CKDYFDLVIT CEERVYDQVV EELNSREQET CQPVHVINVD IQDNHEEATL 150
GAFLICELCQ CIQHTEDMEN EIDELLQEFE DKSGRTFLHT ICFY 194
Length:194
Mass (Da):22,681
Last modified:July 5, 2004 - v1
Checksum:i92B269CB832A2EC6
GO

Sequence conflict

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti31 – 311F → I in AAH98966. 1 Publication
Sequence conflicti91 – 911I → V in AAH98966. 1 Publication
Sequence conflicti178 – 1781E → D in AAH98966. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BC070675 mRNA. Translation: AAH70675.1.
BC098966 mRNA. Translation: AAH98966.1.
RefSeqiNP_001084864.1. NM_001091395.1.
NP_001089572.1. NM_001096103.1.
UniGeneiXl.48475.
Xl.9702.

Genome annotation databases

GeneIDi431913.
734628.
KEGGixla:431913.
xla:734628.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BC070675 mRNA. Translation: AAH70675.1 .
BC098966 mRNA. Translation: AAH98966.1 .
RefSeqi NP_001084864.1. NM_001091395.1.
NP_001089572.1. NM_001096103.1.
UniGenei Xl.48475.
Xl.9702.

3D structure databases

ProteinModelPortali Q6NRQ7.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 431913.
734628.
KEGGi xla:431913.
xla:734628.

Organism-specific databases

CTDi 29101.
Xenbasei XB-GENE-5725684. ssu72.

Phylogenomic databases

HOVERGENi HBG059831.
KOi K15544.

Family and domain databases

InterProi IPR006811. RNA_pol_II_suA.
[Graphical view ]
PANTHERi PTHR20383. PTHR20383. 1 hit.
Pfami PF04722. Ssu72. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. NIH - Xenopus Gene Collection (XGC) project
    Submitted (MAY-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Embryo.

Entry informationi

Entry nameiSSU72_XENLA
AccessioniPrimary (citable) accession number: Q6NRQ7
Secondary accession number(s): Q4KLW8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 29, 2008
Last sequence update: July 5, 2004
Last modified: April 16, 2014
This is version 40 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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