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Protein

TBC1 domain family member 23

Gene

tbc1d23

Organism
Xenopus laevis (African clawed frog)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
TBC1 domain family member 23
Gene namesi
Name:tbc1d23
OrganismiXenopus laevis (African clawed frog)
Taxonomic identifieri8355 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiAmphibiaBatrachiaAnuraPipoideaPipidaeXenopodinaeXenopusXenopus

Organism-specific databases

XenbaseiXB-GENE-5893511. tbc1d23.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 682682TBC1 domain family member 23PRO_0000287502Add
BLAST

Structurei

3D structure databases

ProteinModelPortaliQ6NRC7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini29 – 210182Rab-GAP TBCPROSITE-ProRule annotationAdd
BLAST
Domaini318 – 426109RhodanesePROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 Rab-GAP TBC domain.PROSITE-ProRule annotation
Contains 1 rhodanese domain.PROSITE-ProRule annotation

Phylogenomic databases

HOVERGENiHBG055636.

Family and domain databases

Gene3Di3.40.250.10. 1 hit.
InterProiIPR000195. Rab-GTPase-TBC_dom.
IPR001763. Rhodanese-like_dom.
[Graphical view]
PfamiPF00566. RabGAP-TBC. 1 hit.
PF00581. Rhodanese. 1 hit.
[Graphical view]
SMARTiSM00164. TBC. 1 hit.
[Graphical view]
SUPFAMiSSF47923. SSF47923. 1 hit.
SSF52821. SSF52821. 1 hit.
PROSITEiPS50206. RHODANESE_3. 1 hit.
PS50086. TBC_RABGAP. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q6NRC7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MCREADLSEA LEAGGCDLET VRNIIQGRPV PCDLRTKVWK IALNVSGKGD
60 70 80 90 100
SLASWDGSLD LQEQPLIHRD CQNLIDRLSV AEERKTALLE DIESVVTFYC
110 120 130 140 150
KSRNVKYQED ASWIHLLNPL VGLQLPRSDL YNCFYAIMNK YIPRDCNRKG
160 170 180 190 200
KPFHLFRLLL QYHEPELCSF LDTKKITPDL YALNWFGSLF AFHCSVEVTQ
210 220 230 240 250
AIWDNYLQQA DPFFMYFLML IMLVNSKETV LGQDMDDKEE LIKCLENTPS
260 270 280 290 300
SLEVEDIEDL FSLAQYYYSK TPASFRKDHQ SLFGSSLIAF KDDTDLSQAL
310 320 330 340 350
CLAVSVSEIL QANQQQGDGV RFFVVDCRPA EQYNSGHLST AFHLDSDLML
360 370 380 390 400
QNPGEFALSV KSLLEAQKQS IESGSIAGGE HLCFMGSGRD EEDMYINMVL
410 420 430 440 450
AHFLQKNKEY ISIAKGGFMA LQQHLADFNM ENGYGHWIVS TSGSHSSISM
460 470 480 490 500
YADGDSAVAA DDGKGMKSLV NKMTVAFKTK SVNVKDKVIS FIENTATPVD
510 520 530 540 550
RITFNIPWPE RASLERHVSS SDRVGKPYRG VKPVFSIGDE EEYDTDEVDS
560 570 580 590 600
SSMSDDDRKE IVNVQTWINK PDVKHHFPCD EVKDNGHRFP SHLLVTATHM
610 620 630 640 650
YCLREILSKK GFAYIQSRQA LSTVVKITSK KKHPELITFK YGSSNASGVE
660 670 680
ISAVERYLIP NAGDATKAIK QQIMKVLDAL ES
Length:682
Mass (Da):76,850
Last modified:July 5, 2004 - v1
Checksum:iAAD2C7BF9699A044
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC070830 mRNA. Translation: AAH70830.1.
RefSeqiNP_001084850.1. NM_001091381.1.
UniGeneiXl.11670.

Genome annotation databases

GeneIDi431896.
KEGGixla:431896.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC070830 mRNA. Translation: AAH70830.1.
RefSeqiNP_001084850.1. NM_001091381.1.
UniGeneiXl.11670.

3D structure databases

ProteinModelPortaliQ6NRC7.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi431896.
KEGGixla:431896.

Organism-specific databases

CTDi55773.
XenbaseiXB-GENE-5893511. tbc1d23.

Phylogenomic databases

HOVERGENiHBG055636.

Family and domain databases

Gene3Di3.40.250.10. 1 hit.
InterProiIPR000195. Rab-GTPase-TBC_dom.
IPR001763. Rhodanese-like_dom.
[Graphical view]
PfamiPF00566. RabGAP-TBC. 1 hit.
PF00581. Rhodanese. 1 hit.
[Graphical view]
SMARTiSM00164. TBC. 1 hit.
[Graphical view]
SUPFAMiSSF47923. SSF47923. 1 hit.
SSF52821. SSF52821. 1 hit.
PROSITEiPS50206. RHODANESE_3. 1 hit.
PS50086. TBC_RABGAP. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. NIH - Xenopus Gene Collection (XGC) project
    Submitted (MAY-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Oocyte.

Entry informationi

Entry nameiTBC23_XENLA
AccessioniPrimary (citable) accession number: Q6NRC7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 15, 2007
Last sequence update: July 5, 2004
Last modified: April 29, 2015
This is version 43 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.