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Q6NQL4 (Q6NQL4_ARATH) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 64. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) EMBL AEE29437.1
Submitted name:
At1g16340 EMBL AAQ62439.1
Submitted name:
Putative 3-deoxy-D-manno-2-octulosonate-8-phosphate synthase EMBL BAD43170.1
Gene names
Name:ATKDSA2 EMBL AEE29437.1
Ordered Locus Names:At1g16340 TAIR At1g16340
ORF Names:AT1G16340 EMBL AEE29437.1
OrganismArabidopsis thaliana (Mouse-ear cress) EMBL AAQ62439.1
Taxonomic identifier3702 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis

Protein attributes

Sequence length291 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Ontologies

Keywords
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological processrhamnogalacturonan II biosynthetic process

Traceable author statement. Source: TAIR

   Cellular componentcytoplasm

Inferred from electronic annotation. Source: InterPro

   Molecular function3-deoxy-8-phosphooctulonate synthase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q6NQL4 [UniParc].

Last modified July 5, 2004. Version 1.
Checksum: E0EEC13A56AD9FAC

FASTA29131,676
        10         20         30         40         50         60 
MANSASLLYD QLKVAEPFFL LAGPNVIESE EHVLRMAKSI KDISTKLGLP LVFKSSFDKA 

        70         80         90        100        110        120 
NRTSSKSFRG PGMAEGLKIL EKVKVAFDLP IVTDVHESSQ CEAVGKVADI IQIPAFLCRQ 

       130        140        150        160        170        180 
TDLLVAAAQS GKIINIKKGQ FCGHSVMRNS AEKVRLAGNP NVMVCERGTM FGYNDLIVDP 

       190        200        210        220        230        240 
RNLEWMREAD CPVVADITHS LQQPAGKKLD GGGVASGGLR ELIPCIARTA VAVGVDGIFM 

       250        260        270        280        290 
EVHDDPLNAP VDGPTQWPLR HLEELLEELI AIASVTKGKQ QFQIDLTPYR D

« Hide

References

« Hide 'large scale' references
[1]"Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K. expand/collapse author list , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
Nature 408:816-820(2000) [PubMed: 11130712] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[2]"Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs."
Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K. expand/collapse author list , Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y., Shinozaki K.
Submitted (SEP-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[3]"Arabidopsis ORF clones."
Shinn P., Chen H., Cheuk R., Kim C.J., Bowser L., Carninci P., Dale J.M., Hayashizaki Y., Ishida J., Jones T., Kamiya A., Karlin-Neumann G., Kawai J., Lam B., Lin J., Miranda M., Narusaka M., Nguyen M. expand/collapse author list , Onodera C.S., Palm C.J., Quach H.L., Sakurai T., Satou M., Seki M., Southwick A., Toriumi M., Wong C., Wu H.C., Yamada K., Yu G., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
Submitted (AUG-2003) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[4]The Arabidopsis Information Resource (TAIR)
Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		BT010438 mRNA. Translation: AAQ62439.1.
CP002684 Genomic DNA. Translation: AEE29437.1.
CP002684 Genomic DNA. Translation: AEE29438.1.
CP002684 Genomic DNA. Translation: AEE29439.1.
AK175407 mRNA. Translation: BAD43170.1.
IPIIPI01020362.
RefSeqNP_001031055.1. NM_001035978.1.
NP_001077547.1. NM_001084078.1.
NP_173084.1. NM_101500.3.
UniGeneAt.43423.

3D structure databases

ProteinModelPortalQ6NQL4.
SMRQ6NQL4. Positions 9-284.
ModBaseSearch...

Protein-protein interaction databases

IntActQ6NQL4. 1 interaction.
STRINGQ6NQL4.

Proteomic databases

PRIDEQ6NQL4.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsAT1G16340.1; AT1G16340.1; AT1G16340.
AT1G16340.2; AT1G16340.2; AT1G16340.
AT1G16340.3; AT1G16340.3; AT1G16340.
GeneID838203.
KEGGath:AT1G16340.
NMPDRfig|3702.1.peg.1946.

Organism-specific databases

TAIRAt1g16340.

Phylogenomic databases

eggNOGCOG2877.
InParanoidQ6NQL4.
OMAQLILCDR.
PhylomeDBQ6NQL4.
ProtClustDBPLN03033.

Gene expression databases

ArrayExpressQ6NQL4.
GenevestigatorQ6NQL4.

Family and domain databases

HAMAPMF_00056. KDO8P_synth.
[Tree]
InterProIPR013785. Aldolase_TIM.
IPR006218. DAHP1/KDSA.
IPR006269. KDO8P_synthase.
[Graphical view]
Gene3DG3DSA:3.20.20.70. Aldolase_TIM. 1 hit.
KOK01627.
PANTHERPTHR21057:SF2. KDO8P_synthase. 1 hit.
PfamPF00793. DAHP_synth_1. 1 hit.
[Graphical view]
TIGRFAMsTIGR01362. KDO8P_synth. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ6NQL4_ARATH
AccessionPrimary (citable) accession number: Q6NQL4
Entry history
Integrated into UniProtKB/TrEMBL: July 5, 2004
Last sequence update: July 5, 2004
Last modified: January 25, 2012
This is version 64 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info