Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

Q6NLW5

- XRI1_ARATH

UniProt

Q6NLW5 - XRI1_ARATH

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein

Protein XRI1

Gene

XRI1

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 5 out of 5- Experimental evidence at protein leveli

Functioni

Required for mitotic division of the generative cell nucleus and the development of mature tricellular pollen grains, and for male and female meiosis.1 Publication

GO - Biological processi

  1. DNA repair Source: TAIR
  2. female meiotic division Source: TAIR
  3. male meiosis Source: TAIR
  4. pollen development Source: TAIR
  5. response to X-ray Source: TAIR
Complete GO annotation...

Keywords - Biological processi

Meiosis

Names & Taxonomyi

Protein namesi
Recommended name:
Protein XRI1
Alternative name(s):
Protein X-RAY INDUCED 1
Gene namesi
Name:XRI1
Ordered Locus Names:At5g48720
ORF Names:K24G6.5
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
ProteomesiUP000006548: Chromosome 5

Organism-specific databases

TAIRiAT5G48720.

Subcellular locationi

Nucleus 1 Publication

GO - Cellular componenti

  1. nucleus Source: TAIR
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

Pathology & Biotechi

Disruption phenotypei

Complete sterility.1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 300300Protein XRI1PRO_0000378327Add
BLAST

Expressioni

Inductioni

By X-rays and bleomycin treatment.2 Publications

Gene expression databases

GenevestigatoriQ6NLW5.

Interactioni

Subunit structurei

Interacts (via C-terminal domain) with MIP1.1 Publication

Binary interactionsi

WithEntry#Exp.IntActNotes
MIP1Q8RX222EBI-2270660,EBI-2270543

Protein-protein interaction databases

IntActiQ6NLW5. 1 interaction.
STRINGi3702.AT5G48720.2-P.

Family & Domainsi

Phylogenomic databases

eggNOGiNOG242961.
HOGENOMiHOG000070695.
InParanoidiQ6NLW5.
OMAiPEEWLVD.
PhylomeDBiQ6NLW5.

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. Align

Isoform 1 (identifier: Q6NLW5-1) [UniParc]FASTAAdd to Basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MDYGDDDRSS SWNWQVDNYN HQPQSHFSDV PDCTMTEVTL NQEDHSYMFD
60 70 80 90 100
DENTPVKACS ELGYHVTTED TNRKMEVHSE TRSALKRRRM LQFEDQPETS
110 120 130 140 150
LFSSESFSAI LKSSARDDTF DELLPEGSQL IEGFSEDASA SSFEGLDLYA
160 170 180 190 200
EEWYADCLND AETPMLPDDL NFGSPDVQVD ISEYLNVPPE TETREVQRPV
210 220 230 240 250
TRSSPNVIFK GRKSFSRPVS KLPSSIIYPF AFIKPCGVHG GMTLKDINQK
260 270 280 290 300
IRNPPAKPKA HIEEPAVIQT SAFSGKPVVG KTKIRTEGGK GSITIMRTRG

Note: No experimental confirmation available.

Length:300
Mass (Da):33,719
Last modified:June 16, 2009 - v2
Checksum:i23B32F668BDB6FEA
GO
Isoform 2 (identifier: Q6NLW5-2) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-34: Missing.

Show »
Length:266
Mass (Da):29,690
Checksum:iC5B4097B2B22F282
GO

Sequence cautioni

The sequence BAB09425.1 differs from that shown. Reason: Erroneous gene model prediction. Curated

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei1 – 3434Missing in isoform 2. 1 PublicationVSP_037542Add
BLAST

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB012242 Genomic DNA. Translation: BAB09425.1. Sequence problems.
CP002688 Genomic DNA. Translation: AED95715.1.
CP002688 Genomic DNA. Translation: AED95716.1.
BT012214 mRNA. Translation: AAS76701.1.
BT020567 mRNA. Translation: AAW78586.1.
RefSeqiNP_001154770.1. NM_001161298.1. [Q6NLW5-1]
NP_199683.2. NM_124249.2. [Q6NLW5-2]
UniGeneiAt.50516.

Genome annotation databases

EnsemblPlantsiAT5G48720.2; AT5G48720.2; AT5G48720. [Q6NLW5-1]
GeneIDi834930.
KEGGiath:AT5G48720.

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB012242 Genomic DNA. Translation: BAB09425.1 . Sequence problems.
CP002688 Genomic DNA. Translation: AED95715.1 .
CP002688 Genomic DNA. Translation: AED95716.1 .
BT012214 mRNA. Translation: AAS76701.1 .
BT020567 mRNA. Translation: AAW78586.1 .
RefSeqi NP_001154770.1. NM_001161298.1. [Q6NLW5-1 ]
NP_199683.2. NM_124249.2. [Q6NLW5-2 ]
UniGenei At.50516.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

IntActi Q6NLW5. 1 interaction.
STRINGi 3702.AT5G48720.2-P.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi AT5G48720.2 ; AT5G48720.2 ; AT5G48720 . [Q6NLW5-1 ]
GeneIDi 834930.
KEGGi ath:AT5G48720.

Organism-specific databases

TAIRi AT5G48720.

Phylogenomic databases

eggNOGi NOG242961.
HOGENOMi HOG000070695.
InParanoidi Q6NLW5.
OMAi PEEWLVD.
PhylomeDBi Q6NLW5.

Gene expression databases

Genevestigatori Q6NLW5.

Family and domain databases

ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "A novel ATM dependant X-ray inducible gene is essential for both plant meiosis and gametogenesis."
    Dean P.J., Siwiec T., Waterworth W.M., Schloegelhofer P., Armstrong S.J., West C.E.
    Plant J. 58:791-802(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), FUNCTION, INDUCTION BY X-RAYS, SUBCELLULAR LOCATION, DISRUPTION PHENOTYPE, INTERACTION WITH MIP1.
  2. "Structural analysis of Arabidopsis thaliana chromosome 5. VI. Sequence features of the regions of 1,367,185 bp covered by 19 physically assigned P1 and TAC clones."
    Kotani H., Nakamura Y., Sato S., Asamizu E., Kaneko T., Miyajima N., Tabata S.
    DNA Res. 5:203-216(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  3. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  4. "Arabidopsis ORF clones."
    Kim C.J., Chen H., Cheuk R.F., Shinn P., Ecker J.R.
    Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
    Strain: cv. Columbia.
  5. Cited for: INDUCTION BY BLEOMYCIN.

Entry informationi

Entry nameiXRI1_ARATH
AccessioniPrimary (citable) accession number: Q6NLW5
Secondary accession number(s): Q9FKC4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 16, 2009
Last sequence update: June 16, 2009
Last modified: October 29, 2014
This is version 56 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Miscellaneous

The induction by X-rays is dependent on DNA damage signaling by ATM.

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names

External Data

Dasty 3