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Q6NLW5

- XRI1_ARATH

UniProt

Q6NLW5 - XRI1_ARATH

Protein

Protein XRI1

Gene

XRI1

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 5 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 55 (01 Oct 2014)
      Sequence version 2 (16 Jun 2009)
      Previous versions | rss
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    Functioni

    Required for mitotic division of the generative cell nucleus and the development of mature tricellular pollen grains, and for male and female meiosis.1 Publication

    GO - Molecular functioni

    1. protein binding Source: IntAct

    GO - Biological processi

    1. DNA repair Source: TAIR
    2. female meiotic division Source: TAIR
    3. male meiosis Source: TAIR
    4. pollen development Source: TAIR
    5. response to X-ray Source: TAIR

    Keywords - Biological processi

    Meiosis

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Protein XRI1
    Alternative name(s):
    Protein X-RAY INDUCED 1
    Gene namesi
    Name:XRI1
    Ordered Locus Names:At5g48720
    ORF Names:K24G6.5
    OrganismiArabidopsis thaliana (Mouse-ear cress)
    Taxonomic identifieri3702 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
    ProteomesiUP000006548: Chromosome 5

    Organism-specific databases

    TAIRiAT5G48720.

    Subcellular locationi

    Nucleus 1 Publication

    GO - Cellular componenti

    1. nucleus Source: TAIR

    Keywords - Cellular componenti

    Nucleus

    Pathology & Biotechi

    Disruption phenotypei

    Complete sterility.1 Publication

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 300300Protein XRI1PRO_0000378327Add
    BLAST

    Expressioni

    Inductioni

    By X-rays and bleomycin treatment.2 Publications

    Gene expression databases

    GenevestigatoriQ6NLW5.

    Interactioni

    Subunit structurei

    Interacts (via C-terminal domain) with MIP1.1 Publication

    Binary interactionsi

    WithEntry#Exp.IntActNotes
    MIP1Q8RX222EBI-2270660,EBI-2270543

    Protein-protein interaction databases

    IntActiQ6NLW5. 1 interaction.
    STRINGi3702.AT5G48720.2-P.

    Family & Domainsi

    Phylogenomic databases

    eggNOGiNOG242961.
    HOGENOMiHOG000070695.
    InParanoidiQ6NLW5.
    OMAiPEEWLVD.
    PhylomeDBiQ6NLW5.

    Sequences (2)i

    Sequence statusi: Complete.

    This entry describes 2 isoformsi produced by alternative splicing. Align

    Isoform 1 (identifier: Q6NLW5-1) [UniParc]FASTAAdd to Basket

    This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

    « Hide

    MDYGDDDRSS SWNWQVDNYN HQPQSHFSDV PDCTMTEVTL NQEDHSYMFD    50
    DENTPVKACS ELGYHVTTED TNRKMEVHSE TRSALKRRRM LQFEDQPETS 100
    LFSSESFSAI LKSSARDDTF DELLPEGSQL IEGFSEDASA SSFEGLDLYA 150
    EEWYADCLND AETPMLPDDL NFGSPDVQVD ISEYLNVPPE TETREVQRPV 200
    TRSSPNVIFK GRKSFSRPVS KLPSSIIYPF AFIKPCGVHG GMTLKDINQK 250
    IRNPPAKPKA HIEEPAVIQT SAFSGKPVVG KTKIRTEGGK GSITIMRTRG 300

    Note: No experimental confirmation available.

    Length:300
    Mass (Da):33,719
    Last modified:June 16, 2009 - v2
    Checksum:i23B32F668BDB6FEA
    GO
    Isoform 2 (identifier: Q6NLW5-2) [UniParc]FASTAAdd to Basket

    The sequence of this isoform differs from the canonical sequence as follows:
         1-34: Missing.

    Show »
    Length:266
    Mass (Da):29,690
    Checksum:iC5B4097B2B22F282
    GO

    Sequence cautioni

    The sequence BAB09425.1 differs from that shown. Reason: Erroneous gene model prediction.

    Alternative sequence

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Alternative sequencei1 – 3434Missing in isoform 2. 1 PublicationVSP_037542Add
    BLAST

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AB012242 Genomic DNA. Translation: BAB09425.1. Sequence problems.
    CP002688 Genomic DNA. Translation: AED95715.1.
    CP002688 Genomic DNA. Translation: AED95716.1.
    BT012214 mRNA. Translation: AAS76701.1.
    BT020567 mRNA. Translation: AAW78586.1.
    RefSeqiNP_001154770.1. NM_001161298.1. [Q6NLW5-1]
    NP_199683.2. NM_124249.2. [Q6NLW5-2]
    UniGeneiAt.50516.

    Genome annotation databases

    EnsemblPlantsiAT5G48720.2; AT5G48720.2; AT5G48720. [Q6NLW5-1]
    GeneIDi834930.
    KEGGiath:AT5G48720.

    Keywords - Coding sequence diversityi

    Alternative splicing

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AB012242 Genomic DNA. Translation: BAB09425.1 . Sequence problems.
    CP002688 Genomic DNA. Translation: AED95715.1 .
    CP002688 Genomic DNA. Translation: AED95716.1 .
    BT012214 mRNA. Translation: AAS76701.1 .
    BT020567 mRNA. Translation: AAW78586.1 .
    RefSeqi NP_001154770.1. NM_001161298.1. [Q6NLW5-1 ]
    NP_199683.2. NM_124249.2. [Q6NLW5-2 ]
    UniGenei At.50516.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    IntActi Q6NLW5. 1 interaction.
    STRINGi 3702.AT5G48720.2-P.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi AT5G48720.2 ; AT5G48720.2 ; AT5G48720 . [Q6NLW5-1 ]
    GeneIDi 834930.
    KEGGi ath:AT5G48720.

    Organism-specific databases

    TAIRi AT5G48720.

    Phylogenomic databases

    eggNOGi NOG242961.
    HOGENOMi HOG000070695.
    InParanoidi Q6NLW5.
    OMAi PEEWLVD.
    PhylomeDBi Q6NLW5.

    Gene expression databases

    Genevestigatori Q6NLW5.

    Family and domain databases

    ProtoNeti Search...

    Publicationsi

    1. "A novel ATM dependant X-ray inducible gene is essential for both plant meiosis and gametogenesis."
      Dean P.J., Siwiec T., Waterworth W.M., Schloegelhofer P., Armstrong S.J., West C.E.
      Plant J. 58:791-802(2009) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), FUNCTION, INDUCTION BY X-RAYS, SUBCELLULAR LOCATION, DISRUPTION PHENOTYPE, INTERACTION WITH MIP1.
    2. "Structural analysis of Arabidopsis thaliana chromosome 5. VI. Sequence features of the regions of 1,367,185 bp covered by 19 physically assigned P1 and TAC clones."
      Kotani H., Nakamura Y., Sato S., Asamizu E., Kaneko T., Miyajima N., Tabata S.
      DNA Res. 5:203-216(1998) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Columbia.
    3. The Arabidopsis Information Resource (TAIR)
      Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: GENOME REANNOTATION.
      Strain: cv. Columbia.
    4. "Arabidopsis ORF clones."
      Kim C.J., Chen H., Cheuk R.F., Shinn P., Ecker J.R.
      Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
      Strain: cv. Columbia.
    5. Cited for: INDUCTION BY BLEOMYCIN.

    Entry informationi

    Entry nameiXRI1_ARATH
    AccessioniPrimary (citable) accession number: Q6NLW5
    Secondary accession number(s): Q9FKC4
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: June 16, 2009
    Last sequence update: June 16, 2009
    Last modified: October 1, 2014
    This is version 55 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Miscellaneous

    The induction by X-rays is dependent on DNA damage signaling by ATM.

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Arabidopsis thaliana
      Arabidopsis thaliana: entries and gene names

    External Data

    Dasty 3