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Protein

ABC transporter D family member 2, chloroplastic

Gene

ABCC2

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi464 – 471ATPPROSITE-ProRule annotation8

GO - Molecular functioni

Keywordsi

Molecular functionHydrolase
Biological processTransport
LigandATP-binding, Nucleotide-binding

Enzyme and pathway databases

BioCyciARA:AT1G54350-MONOMER.

Protein family/group databases

TCDBi3.A.1.203.8. the atp-binding cassette (abc) superfamily.

Names & Taxonomyi

Protein namesi
Recommended name:
ABC transporter D family member 2, chloroplastic (EC:3.6.3.-)
Short name:
ABC transporter ABCD.2
Short name:
AtABCD2
Gene namesi
Name:ABCC2
Synonyms:PMP1
Ordered Locus Names:At1g54350
ORF Names:F20D21.17
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

AraportiAT1G54350.
TAIRilocus:2020138. AT1G54350.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei88 – 108HelicalPROSITE-ProRule annotationAdd BLAST21
Transmembranei124 – 144HelicalPROSITE-ProRule annotationAdd BLAST21
Transmembranei200 – 222HelicalPROSITE-ProRule annotationAdd BLAST23
Transmembranei237 – 257HelicalPROSITE-ProRule annotationAdd BLAST21
Transmembranei326 – 346HelicalPROSITE-ProRule annotationAdd BLAST21

GO - Cellular componenti

  • chloroplast Source: TAIR
  • integral component of membrane Source: UniProtKB-KW

Keywords - Cellular componenti

Chloroplast, Membrane, Plastid

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transit peptidei1 – 44Chloroplast1 PublicationAdd BLAST44
ChainiPRO_000037913645 – 706ABC transporter D family member 2, chloroplasticAdd BLAST662

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei45N-acetylserine1 Publication1

Keywords - PTMi

Acetylation

Proteomic databases

PaxDbiQ6NLC1.

Expressioni

Gene expression databases

ExpressionAtlasiQ6NLC1. baseline and differential.
GenevisibleiQ6NLC1. AT.

Interactioni

Subunit structurei

Homodimer or heterodimer.Curated

Protein-protein interaction databases

BioGridi27101. 15 interactors.
STRINGi3702.AT1G54350.1.

Structurei

3D structure databases

ProteinModelPortaliQ6NLC1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini88 – 372ABC transmembrane type-1PROSITE-ProRule annotationAdd BLAST285
Domaini430 – 697ABC transporterPROSITE-ProRule annotationAdd BLAST268

Sequence similaritiesi

Keywords - Domaini

Transit peptide, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiKOG0060. Eukaryota.
COG4178. LUCA.
HOGENOMiHOG000255119.
OMAiTIIHMNR.
OrthoDBiEOG09360102.
PhylomeDBiQ6NLC1.

Family and domain databases

InterProiView protein in InterPro
IPR003593. AAA+_ATPase.
IPR011527. ABC1_TM_dom.
IPR003439. ABC_transporter-like.
IPR017871. ABC_transporter_CS.
IPR027417. P-loop_NTPase.
PfamiView protein in Pfam
PF06472. ABC_membrane_2. 1 hit.
PF00005. ABC_tran. 1 hit.
SMARTiView protein in SMART
SM00382. AAA. 1 hit.
SUPFAMiSSF52540. SSF52540. 2 hits.
SSF90123. SSF90123. 1 hit.
PROSITEiView protein in PROSITE
PS50929. ABC_TM1F. 1 hit.
PS00211. ABC_TRANSPORTER_1. 1 hit.
PS50893. ABC_TRANSPORTER_2. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q6NLC1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MILMITAPVC PPHLLLRHSS LLRHESSIGN FHRKKNPRFR TVSCSSLLPQ
60 70 80 90 100
PSVRPDKASE LKTLWKKFYK VASPYWFSED KDQARLRLAA VFALTLATTG
110 120 130 140 150
ISVGFNFLGR DFYNSLANKD QEQFTKQLFY YLCAFAGGIP FFVLRDYTKE
160 170 180 190 200
TLSLRWRSWM TKYYLQRYLK DQTFYKIQSQ SIIDNPDQRL VDDLSSFTGT
210 220 230 240 250
ALSFSLTLVN ATIDLISFSN ILFTIYPPLF LVLLLYSFGG TAISVFLGKG
260 270 280 290 300
LVNLNFLQEK KEADFRYSLV RVRENAESIA FYGGEQNEMQ LLLQRFRSAF
310 320 330 340 350
DNLTELLIAS RNLEFFTDGY RYLIQILPVA VVAPMYFSGK IEFGVINQSV
360 370 380 390 400
SAFNHILGDF SLVVYQFQAI SSFSAVIDRL GEFDDLLDNN IFRDPSDTVD
410 420 430 440 450
EIELTYQSEM NSSLLDTNGS IKSQPNQKRL EIEELTLQTP TNGTTLVHNL
460 470 480 490 500
SADVYDKDHL LIMGPSGSGK TSLLRAMAGL WRSGKGKITF YLDPEVDFTQ
510 520 530 540 550
EKSDTQENSG KRGDVLFLPQ RPYMVLGSLR QQLLYPTWSA TVEETTPGGS
560 570 580 590 600
NIDGSPPLLI REDGNEKPTT DDLMRTLEKV CLGHIADRFG GLDSIHEWSS
610 620 630 640 650
VLSLGEQQRL AFARLLLSQP KLALLDESTS ALDEANEAFL YQQIQSAGIT
660 670 680 690 700
YISIGHRRTL TKFHNKILQI STADPKSNER NWRIEDVDAQ DSLYGRLNQK

EVPSES
Length:706
Mass (Da):80,054
Last modified:July 5, 2004 - v1
Checksum:i4E6422F72A26F7FC
GO

Sequence cautioni

The sequence AAD25615 differs from that shown. Reason: Erroneous gene model prediction.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC005287 Genomic DNA. Translation: AAD25615.1. Sequence problems.
CP002684 Genomic DNA. Translation: AEE33083.1.
BT012226 mRNA. Translation: AAS76713.1.
BT012413 mRNA. Translation: AAS92329.1.
PIRiB96585.
RefSeqiNP_175837.2. NM_104313.4.
UniGeneiAt.37230.

Genome annotation databases

EnsemblPlantsiAT1G54350.1; AT1G54350.1; AT1G54350.
GeneIDi841876.
GrameneiAT1G54350.1; AT1G54350.1; AT1G54350.
KEGGiath:AT1G54350.

Similar proteinsi

Entry informationi

Entry nameiAB2D_ARATH
AccessioniPrimary (citable) accession number: Q6NLC1
Secondary accession number(s): Q9SLJ9
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 7, 2009
Last sequence update: July 5, 2004
Last modified: June 7, 2017
This is version 104 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families