Q6NGM7 (SYP_CORDI) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Proline--tRNA ligase
EC=6.1.1.15

Alternative name(s):
Prolyl-tRNA synthetase
Short name=ProRS

Gene names

Name:	proS
Ordered Locus Names:	DIP1482

Organism

Corynebacterium diphtheriae [Complete proteome] [HAMAP]

Taxonomic identifier

1717 [NCBI]

Taxonomic lineage

Bacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Corynebacteriaceae › Corynebacterium

Protein attributes

Sequence length	585 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys-tRNA(Pro) is not edited by ProRS By similarity. HAMAP MF_01569
Catalytic activity	ATP + L-proline + tRNA(Pro) = AMP + diphosphate + L-prolyl-tRNA(Pro). HAMAP MF_01569
Subunit structure	Homodimer By similarity. HAMAP MF_01569
Subcellular location	Cytoplasm By similarity HAMAP MF_01569.
Domain	Consists of three domains: the N-terminal catalytic domain, the editing domain and the C-terminal anticodon-binding domain By similarity. HAMAP MF_01569
Sequence similarities	Belongs to the class-II aminoacyl-tRNA synthetase family. ProS type 1 subfamily.

Ontologies

Keywords
Biological process	Protein biosynthesis
Cellular component	Cytoplasm
Ligand	ATP-binding Nucleotide-binding
Molecular function	Aminoacyl-tRNA synthetase Ligase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	prolyl-tRNA aminoacylation Inferred from electronic annotation. Source: InterPro
Cellular component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW proline-tRNA ligase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 585	585	Proline--tRNA ligase HAMAP MF_01569		PRO_0000248676

Sequences

	Sequence		Length	Mass (Da)
	Q6NGM7 [UniParc]. Last modified July 5, 2004. Version 1. Checksum: 16D734C3A613E7A4	FASTA	585	64,466
	10 20 30 40 50 60 MITRLSTLFL RTLREDPADA EVPSHKLLVR AGYIRRTAPG VYTWLPLGLR TLRKVETVVR 70 80 90 100 110 120 EEMDAIGAQE LLFPALLPRE PYEQTHRWTE YGDSLFRLKD RKGGDYLLGP THEEMFASAV 130 140 150 160 170 180 KDMYSSYKDF PVTLYQIQTK YRDEERPRAG ILRGREFVMK DSYSFDMSDA GLEDSYQRHR 190 200 210 220 230 240 EAYQRILDRL GVEYVICAAT SGAMGGSASE EFLAVSDNGE DTFVRATEGP YAANVEAVVT 250 260 270 280 290 300 QPGVERPLEQ APEAVEYETP NAETIEALVQ WAQSAGVTVE DRSVAAADTL KCLLVKITQP 310 320 330 340 350 360 GAEEAELAGI LLPGDREVDM KRLEASVEPA EVELASEEDF KNNPFLVKGY VGPRALNAHG 370 380 390 400 410 420 VKVLADPRVV SGTSWIAGAD AVEHHVVGLT MGRDFTVDGY IEAAEIREGD PAPEGQGTLT 430 440 450 460 470 480 LARGIEVGHI FQLGRKYTEA FDVQILDESG KRAIPTMGSY GIGVSRLMAV LAEQRHDETG 490 500 510 520 530 540 LNWPLEVAPY QVHVVVANKD KEAIEAGDAL VAALDSHGIE VLFDDRPKVS PGVKFKDAEL 550 560 570 580 LGMPFVVVLG RAFKDGNIEL RERGQETVLV SADEIVDTVV AKLNR

References

[1]

"The complete genome sequence and analysis of Corynebacterium diphtheriae NCTC13129." Cerdeno-Tarraga A.-M., Efstratiou A., Dover L.G., Holden M.T.G., Pallen M.J., Bentley S.D., Besra G.S., Churcher C.M., James K.D., De Zoysa A., Chillingworth T., Cronin A., Dowd L., Feltwell T., Hamlin N., Holroyd S., Jagels K., Moule S. , Quail M.A., Rabbinowitsch E., Rutherford K.M., Thomson N.R., Unwin L., Whitehead S., Barrell B.G., Parkhill J. Nucleic Acids Res. 31:6516-6523(2003) [PubMed: 14602910] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 700971 / NCTC 13129 / Biotype gravis.

Cross-references

Sequence databases
EMBL GenBank DDBJ	BX248358 Genomic DNA. Translation: CAE50010.1.
RefSeq	NP_939830.1. NC_002935.2.
3D structure databases
ProteinModelPortal	Q6NGM7.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	2650367.
GenomeReviews	Gene locus DIP1482 in contig BX248353_GR.
KEGG	cdi:DIP1482.
NMPDR	fig|257309.1.peg.1421.
PATRIC	21484172. VBICorDip47633_1462.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG403504.
OMA	IQPAELW.
PhylomeDB	Q6NGM7.
ProtClustDB	PRK09194.
Enzyme and pathway databases
BioCyc	CDIP257309:DIP1482-MONOMER.
Family and domain databases
HAMAP	MF_01569. Pro_tRNA_synth_type1. [Tree]
InterPro	IPR002314. aa-tRNA-synt_IIb_cons-dom. IPR006195. aa-tRNA-synth_II. IPR004154. Anticodon-bd. IPR002316. Pro-tRNA-synth_IIa. IPR004500. Pro-tRNA-synth_IIa_bac-type. IPR023717. Pro-tRNA-Synthase_IIa_type1. IPR007214. YbaK/aa-tRNA-synth-assoc-dom. [Graphical view]
Gene3D	G3DSA:3.40.50.800. Anticodon_bd. 1 hit. G3DSA:3.90.960.10. YbaK/aa-tRNA-synth-assoc-reg. 1 hit.
KO	K01881.
PANTHER	PTHR11451:SF3. PTHR11451:SF3. 1 hit.
Pfam	PF03129. HGTP_anticodon. 1 hit. PF00587. tRNA-synt_2b. 1 hit. PF04073. YbaK. 1 hit. [Graphical view]
PRINTS	PR01046. TRNASYNTHPRO.
SUPFAM	SSF52954. Anticodon_bd. 1 hit. SSF55826. YbaK/aa-tRNA-synth-assoc-reg. 1 hit.
TIGRFAMs	TIGR00409. ProS_fam_II. 1 hit.
PROSITE	PS50862. AA_TRNA_LIGASE_II. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

SYP_CORDI

Accession

Primary (citable) accession number: Q6NGM7

Entry history

Integrated into UniProtKB/Swiss-Prot:	September 5, 2006
Last sequence update:	July 5, 2004
Last modified:	January 25, 2012
This is version 58 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program