Q6NGI4 (RIMM_CORDI) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Ribosome maturation factor rimM

Gene names

Name:	rimM
Ordered Locus Names:	DIP1531

Organism

Corynebacterium diphtheriae [Complete proteome] [HAMAP]

Taxonomic identifier

1717 [NCBI]

Taxonomic lineage

Bacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Corynebacteriaceae › Corynebacterium

Protein attributes

Sequence length	166 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes By similarity. HAMAP MF_00014
Subunit structure	Binds ribosomal protein S19 By similarity. HAMAP MF_00014
Subcellular location	Cytoplasm By similarity HAMAP MF_00014.
Domain	The PRC barrel domain binds ribosomal protein S19 By similarity. HAMAP MF_00014
Sequence similarities	Belongs to the rimM family. Contains 1 PRC barrel domain.

Ontologies

Keywords
Biological process	Ribosome biogenesis
Cellular component	Cytoplasm
Molecular function	Chaperone
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	rRNA processing Inferred from electronic annotation. Source: InterPro
Cellular component	ribosome Inferred from electronic annotation. Source: InterPro
Molecular function	ribosome binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 166	166	Ribosome maturation factor rimM HAMAP MF_00014		PRO_0000163280
Regions
	Domain	91 – 163	73	PRC barrel

Sequences

	Sequence		Length	Mass (Da)
	Q6NGI4 [UniParc]. Last modified July 5, 2004. Version 1. Checksum: 152CC4798CBB1092	FASTA	166	18,067
	10 20 30 40 50 60 MELMIGRVVK SHGIRGEVAI EVTTEEPEIR FAQGEVLNGR QGGKEHSLTI ASVRPHQNRL 70 80 90 100 110 120 LVKFKEIADR TAADSLRGTR FFAAPLDDDV DDGFYDHELE GLAVIHGEEK IGEVSGVIHG 130 140 150 160 PAQSLLEVTL ESGKEVLIPF VHDIVPEVDL DAGTCVITPP EGLLEL

References

[1]

"The complete genome sequence and analysis of Corynebacterium diphtheriae NCTC13129." Cerdeno-Tarraga A.-M., Efstratiou A., Dover L.G., Holden M.T.G., Pallen M.J., Bentley S.D., Besra G.S., Churcher C.M., James K.D., De Zoysa A., Chillingworth T., Cronin A., Dowd L., Feltwell T., Hamlin N., Holroyd S., Jagels K., Moule S. , Quail M.A., Rabbinowitsch E., Rutherford K.M., Thomson N.R., Unwin L., Whitehead S., Barrell B.G., Parkhill J. Nucleic Acids Res. 31:6516-6523(2003) [PubMed: 14602910] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 700971 / NCTC 13129 / Biotype gravis.

Cross-references

Sequence databases
EMBL GenBank DDBJ	BX248358 Genomic DNA. Translation: CAE50057.1.
RefSeq	NP_939875.1. NC_002935.2.
3D structure databases
ProteinModelPortal	Q6NGI4.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	2650721.
GenomeReviews	Gene locus DIP1531 in contig BX248353_GR.
KEGG	cdi:DIP1531.
NMPDR	fig|257309.1.peg.1466.
PATRIC	21484272. VBICorDip47633_1512.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG703775.
OMA	PDEFYDH.
ProtClustDB	PRK00122.
Enzyme and pathway databases
BioCyc	CDIP257309:DIP1531-MONOMER.
Family and domain databases
HAMAP	MF_00014. Ribosome_mat_RimM. [Tree]
InterPro	IPR011961. 16S_RimM. IPR007903. PRC_barrel. IPR011033. PRC_barrell-like. IPR002676. RimM. IPR009000. Transl_elong_init/rib_B-barrel. [Graphical view]
Gene3D	G3DSA:2.40.30.60. G3DSA:2.40.30.60. 1 hit.
KO	K02860.
Pfam	PF05239. PRC. 1 hit. PF01782. RimM. 1 hit. [Graphical view]
SUPFAM	SSF50346. PRCH_cytoplasmic. 1 hit. SSF50447. Translat_factor. 1 hit.
TIGRFAMs	TIGR02273. 16S_RimM. 1 hit.
ProtoNet	Search...

Entry information

Entry name

RIMM_CORDI

Accession

Primary (citable) accession number: Q6NGI4

Entry history

Integrated into UniProtKB/Swiss-Prot:	February 15, 2005
Last sequence update:	July 5, 2004
Last modified:	January 25, 2012
This is version 46 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program