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Q6NDV2 (Q6NDV2_RHOPA) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 65. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
DNA polymerase III subunit beta PIRNR PIRNR000804

EC=2.7.7.7 PIRNR PIRNR000804
Gene names
Name:dnaN EMBL CAE25446.1
Ordered Locus Names:RPA0002 EMBL CAE25446.1
OrganismRhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) [Complete proteome] [HAMAP] EMBL CAE25446.1
Taxonomic identifier258594 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas

Protein attributes

Sequence length372 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The beta chain is required for initiation of replication once it is clamped onto DNA, it slides freely (bidirectional and ATP-independent) along duplex DNA By similarity. PIRNR PIRNR000804

Catalytic activity

Deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1). PIRNR PIRNR000804 SAAS SAAS022635

Subcellular location

Cytoplasm By similarity PIRNR PIRNR000804 SAAS SAAS022635.

Sequences

Sequence LengthMass (Da)Tools
Q6NDV2 [UniParc].

Last modified July 5, 2004. Version 1.
Checksum: F40C763C0E1009EA

FASTA37240,401
        10         20         30         40         50         60 
MKVTVERAQL LKSLSHVHRV VERRNTIPIL GNVLVRAENA QLALKATDLD LEVTETLPAE 

        70         80         90        100        110        120 
TATAGSTTVP AHMFYDIVRK LPDGSQIVLE SDGDRSVLAI RAGRSRFTLQ TLPESDFPDL 

       130        140        150        160        170        180 
AAGEMSHAFR LPASDVKRLI DRTQFAISTE ETRYYLNGIY LHTAGSPKAS SLRAVATDGH 

       190        200        210        220        230        240 
RLAQLDLTLP SGADGMPGVI VPRKTVGEVQ RLIEDTEAEI GIELSTGKIR FTLGNVVLTS 

       250        260        270        280        290        300 
KLIDGTFPDY GRVIPQNNDK ELLVDKKDFE AAVDRVSTIS SERGRAVKLA LSAGKLVLSV 

       310        320        330        340        350        360 
TNPDSGSATE ELEVEYASDP LDIGFNSRYL LDIAAQIEGE VAVLKLADPG SPTLIQDRDS 

       370 
KSALYVLMPM RV 

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References

[1]"Complete genome sequence of the metabolically versatile photosynthetic bacterium Rhodopseudomonas palustris."
Larimer F.W., Chain P., Hauser L., Lamerdin J.E., Malfatti S., Do L., Land M.L., Pelletier D.A., Beatty J.T., Lang A.S., Tabita F.R., Gibson J.L., Hanson T.E., Bobst C., Torres y Torres J.L., Peres C., Harrison F.H., Gibson J., Harwood C.S.
Nat. Biotechnol. 22:55-61(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC BAA-98 / CGA009.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
BX572593 Genomic DNA. Translation: CAE25446.1.
RefSeqNP_945358.1. NC_005296.1.

3D structure databases

ProteinModelPortalQ6NDV2.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING258594.RPA0002.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAE25446; CAE25446; RPA0002.
GeneID2692805.
KEGGrpa:RPA0002.
PATRIC23284095. VBIRhoPal84835_0002.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000071791.
KOK02338.
OMADYNRVIP.
OrthoDBEOG65J53F.
ProtClustDBPRK05643.

Family and domain databases

InterProIPR001001. DNA_polIII_beta.
IPR022635. DNA_polIII_beta_C.
IPR022637. DNA_polIII_beta_cen.
IPR022634. DNA_polIII_beta_N.
[Graphical view]
PfamPF00712. DNA_pol3_beta. 1 hit.
PF02767. DNA_pol3_beta_2. 1 hit.
PF02768. DNA_pol3_beta_3. 1 hit.
[Graphical view]
PIRSFPIRSF000804. DNA_pol_III_b. 1 hit.
SMARTSM00480. POL3Bc. 1 hit.
[Graphical view]
TIGRFAMsTIGR00663. dnan. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ6NDV2_RHOPA
AccessionPrimary (citable) accession number: Q6NDV2
Entry history
Integrated into UniProtKB/TrEMBL: July 5, 2004
Last sequence update: July 5, 2004
Last modified: April 16, 2014
This is version 65 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)