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Protein
Submitted name:

Ubiquinone biosynthesis protein AarF, a gene required for the first monooxygenase step in CoQ biosynthesis, recently renamed ubiB

Gene

ubiB

Organism
Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionMonooxygenaseImported, Oxidoreductase
LigandUbiquinoneImported

Names & Taxonomyi

Protein namesi
Submitted name:
Ubiquinone biosynthesis protein AarF, a gene required for the first monooxygenase step in CoQ biosynthesis, recently renamed ubiBImported
Gene namesi
Name:ubiBImported
Ordered Locus Names:RPA0082Imported
OrganismiRhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)Imported
Taxonomic identifieri258594 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas
Proteomesi
  • UP000001426 Componenti: Chromosome

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei505 – 522HelicalSequence analysisAdd BLAST18

GO - Cellular componenti

Keywords - Cellular componenti

Membrane

Interactioni

Protein-protein interaction databases

STRINGi258594.RPA0082.

Structurei

3D structure databases

ProteinModelPortaliQ6NDM3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini122 – 525Protein kinaseInterPro annotationAdd BLAST404

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiENOG4105CNK. Bacteria.
COG0661. LUCA.
HOGENOMiHOG000264438.
KOiK03688.
OMAiDFGMMDQ.
OrthoDBiPOG091H03ME.
PhylomeDBiQ6NDM3.

Family and domain databases

InterProiView protein in InterPro
IPR011009. Kinase-like_dom.
IPR000719. Prot_kinase_dom.
IPR010232. UbiB.
IPR004147. UbiB_dom.
PANTHERiPTHR10566:SF105. PTHR10566:SF105. 1 hit.
PfamiView protein in Pfam
PF03109. ABC1. 1 hit.
SUPFAMiSSF56112. SSF56112. 2 hits.
TIGRFAMsiTIGR01982. UbiB. 1 hit.
PROSITEiView protein in PROSITE
PS50011. PROTEIN_KINASE_DOM. 1 hit.

Sequencei

Sequence statusi: Complete.

Q6NDM3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIAALTHVAR LGRAAFVFAR EGVFGVVDPA LIPPAGQVPV RLARLIERRG
60 70 80 90 100
AKSGARLSRA LTRLGPAYLK LGQFLATRPD VVGVAMARDL ESLQDRLPPF
110 120 130 140 150
SQDEAEQVIA ISLERPVRDL FVSLSPPVAA ASIAQVHRGE IELGGVRKQV
160 170 180 190 200
AVKVLRPNVS ARFRRDLSDF FYVAEKAELY SAEARRLRLV EVINTMSRSV
210 220 230 240 250
AMEMDLRLEA AAASEMAENT KDDPDFRVPT VDWDRTSHNV LTMEWIDGIP
260 270 280 290 300
LNDHARLKEA NVDTVELGRK VIQSFLRHAL RDGFFHADMH PGNLFLDRDG
310 320 330 340 350
KLVAVDFGIM GRLLPKERRF LAEILLGFIT RNYRRVAEVH FEAGYVPPHH
360 370 380 390 400
SVENFAQAIR AIGEPIHNRL AEEISMAKLL TLLLEVTGLF DMRTRPELIL
410 420 430 440 450
LQKTMVVVEG VARSFDPKLD IWKVADPVVR EWIQRNLGPI GKVEGALAGA
460 470 480 490 500
GELGHTLTSL PTIVSRAVTV LNQLEVMTKD GLVLAPETIA AIGRTERGRT
510 520
RGRTVALWVI AATFIGVLIA LSRMI
Length:525
Mass (Da):58,157
Last modified:July 5, 2004 - v1
Checksum:i16A0464CCA5105E0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX572593 Genomic DNA. Translation: CAE25526.1.
RefSeqiWP_011155653.1. NC_005296.1.

Genome annotation databases

EnsemblBacteriaiCAE25526; CAE25526; RPA0082.
KEGGirpa:RPA0082.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiQ6NDM3_RHOPA
AccessioniPrimary (citable) accession number: Q6NDM3
Entry historyiIntegrated into UniProtKB/TrEMBL: July 5, 2004
Last sequence update: July 5, 2004
Last modified: June 7, 2017
This is version 98 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported