Q6NDM3 (Q6NDM3_RHOPA) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Ubiquinone biosynthesis protein AarF, a gene required for the first monooxygenase step in CoQ biosynthesis, recently renamed ubiB EMBL CAE25526.1

Gene names

Name:	ubiB EMBL CAE25526.1
Ordered Locus Names:	RPA0082 EMBL CAE25526.1

Organism

Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) [Complete proteome] [HAMAP] EMBL CAE25526.1

Taxonomic identifier

258594 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Bradyrhizobiaceae › Rhodopseudomonas › Rhodopseudomonas palustris

Protein attributes

Sequence length	525 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Required, probably indirectly, for the hydroxylation of 2-octaprenylphenol to 2-octaprenyl-6-hydroxy-phenol, the fourth step in ubiquinone biosynthesis By similarity. SAAS SAAS004147
Subcellular location	Cell inner membrane; Multi-pass membrane protein By similarity SAAS SAAS004147. Cell inner membrane; Single-pass membrane protein By similarity SAAS SAAS004147.

Ontologies

Keywords
Biological process	Ubiquinone biosynthesis SAAS SAAS004147
Cellular component	Cell inner membrane SAAS SAAS004147 Cell membrane Membrane
Domain	Transmembrane Transmembrane helix SAAS SAAS004147
Ligand	Ubiquinone EMBL CAE25526.1
Molecular function	Monooxygenase EMBL CAE25526.1 Oxidoreductase
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	ubiquinone biosynthetic process Inferred from electronic annotation. Source: UniProtKB-KW
Cellular_component	integral to membrane Inferred from electronic annotation. Source: UniProtKB-KW plasma membrane Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro monooxygenase activity Inferred from electronic annotation. Source: UniProtKB-KW protein kinase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q6NDM3 [UniParc]. Last modified July 5, 2004. Version 1. Checksum: 16A0464CCA5105E0	FASTA	525	58,157
	10 20 30 40 50 60 MIAALTHVAR LGRAAFVFAR EGVFGVVDPA LIPPAGQVPV RLARLIERRG AKSGARLSRA 70 80 90 100 110 120 LTRLGPAYLK LGQFLATRPD VVGVAMARDL ESLQDRLPPF SQDEAEQVIA ISLERPVRDL 130 140 150 160 170 180 FVSLSPPVAA ASIAQVHRGE IELGGVRKQV AVKVLRPNVS ARFRRDLSDF FYVAEKAELY 190 200 210 220 230 240 SAEARRLRLV EVINTMSRSV AMEMDLRLEA AAASEMAENT KDDPDFRVPT VDWDRTSHNV 250 260 270 280 290 300 LTMEWIDGIP LNDHARLKEA NVDTVELGRK VIQSFLRHAL RDGFFHADMH PGNLFLDRDG 310 320 330 340 350 360 KLVAVDFGIM GRLLPKERRF LAEILLGFIT RNYRRVAEVH FEAGYVPPHH SVENFAQAIR 370 380 390 400 410 420 AIGEPIHNRL AEEISMAKLL TLLLEVTGLF DMRTRPELIL LQKTMVVVEG VARSFDPKLD 430 440 450 460 470 480 IWKVADPVVR EWIQRNLGPI GKVEGALAGA GELGHTLTSL PTIVSRAVTV LNQLEVMTKD 490 500 510 520 GLVLAPETIA AIGRTERGRT RGRTVALWVI AATFIGVLIA LSRMI

References

[1]

"Complete genome sequence of the metabolically versatile photosynthetic bacterium Rhodopseudomonas palustris." Larimer F.W., Chain P., Hauser L., Lamerdin J., Malfatti S., Do L., Land M.L., Pelletier D.A., Beatty T.J., Lang A.S., Tabita F.R., Gibson J.L., Hanson T.E., Torres y Torres J., Peres C., Harrison F.H., Gibson J., Harwood C.S. Nat. Biotechnol. 22:55-61(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC BAA-98 / CGA009.

Cross-references

Sequence databases
EMBL GenBank DDBJ	BX572593 Genomic DNA. Translation: CAE25526.1.
RefSeq	NP_945438.1. NC_005296.1.
3D structure databases
ProteinModelPortal	Q6NDM3.
ModBase	Search...
Protein-protein interaction databases
STRING	258594.RPA0082.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	CAE25526; CAE25526; RPA0082.
GeneID	2689456.
KEGG	rpa:RPA0082.
PATRIC	23284265. VBIRhoPal84835_0085.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000264438.
KO	K03688.
OMA	TNEMINI.
ProtClustDB	CLSK910541.
Family and domain databases
InterPro	IPR011009. Kinase-like_dom. IPR000719. Prot_kinase_cat_dom. IPR010232. UbiB. IPR004147. UbiB_dom. [Graphical view]
Pfam	PF03109. ABC1. 1 hit. [Graphical view]
SUPFAM	SSF56112. Kinase_like. 1 hit.
TIGRFAMs	TIGR01982. UbiB. 1 hit.
PROSITE	PS50011. PROTEIN_KINASE_DOM. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q6NDM3_RHOPA

Accession

Primary (citable) accession number: Q6NDM3

Entry history

Integrated into UniProtKB/TrEMBL:	July 5, 2004
Last sequence update:	July 5, 2004
Last modified:	May 1, 2013
This is version 63 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)