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Protein

Ribulose bisphosphate carboxylase-like protein 2

Gene

rlp2

Organism
Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

May be involved in sulfur metabolism and oxidative stress response. Does not show RuBisCO activity (By similarity).By similarity

Cofactori

Mg2+By similarityNote: Binds 1 Mg2+ ion per subunit.By similarity

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi198 – 1981Magnesium; via carbamate groupSequence Analysis
Metal bindingi200 – 2001MagnesiumBy similarity
Metal bindingi201 – 2011MagnesiumBy similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

Magnesium, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Ribulose bisphosphate carboxylase-like protein 2
Short name:
RuBisCO-like protein
Gene namesi
Name:rlp2
Ordered Locus Names:RPA0262
OrganismiRhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)
Taxonomic identifieri258594 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas
ProteomesiUP000001426 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 432432Ribulose bisphosphate carboxylase-like protein 2PRO_0000062683Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei198 – 1981N6-carboxylysineSequence Analysis

Interactioni

Subunit structurei

Homodimer.

Protein-protein interaction databases

STRINGi258594.RPA0262.

Structurei

Secondary structure

1
432
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi4 – 96Combined sources
Helixi13 – 153Combined sources
Helixi18 – 203Combined sources
Beta strandi21 – 3212Combined sources
Helixi34 – 4512Combined sources
Helixi60 – 634Combined sources
Beta strandi66 – 749Combined sources
Beta strandi91 – 10111Combined sources
Helixi102 – 1043Combined sources
Helixi109 – 1168Combined sources
Helixi119 – 1224Combined sources
Beta strandi129 – 1368Combined sources
Helixi139 – 1424Combined sources
Helixi151 – 1599Combined sources
Beta strandi166 – 1705Combined sources
Helixi180 – 19213Combined sources
Beta strandi195 – 1984Combined sources
Helixi211 – 22919Combined sources
Beta strandi234 – 2385Combined sources
Helixi245 – 25511Combined sources
Beta strandi260 – 2645Combined sources
Helixi265 – 2684Combined sources
Helixi270 – 2778Combined sources
Beta strandi284 – 2874Combined sources
Helixi291 – 2955Combined sources
Beta strandi300 – 3023Combined sources
Helixi304 – 31411Combined sources
Beta strandi317 – 3215Combined sources
Helixi326 – 3283Combined sources
Helixi332 – 34312Combined sources
Beta strandi353 – 3564Combined sources
Turni362 – 3643Combined sources
Helixi365 – 3728Combined sources
Turni383 – 3875Combined sources
Helixi392 – 40716Combined sources
Helixi412 – 4165Combined sources
Helixi420 – 4289Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2QYGX-ray3.30A/B/C/D1-432[»]
ProteinModelPortaliQ6ND47.
SMRiQ6ND47. Positions 1-429.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ6ND47.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG1850.
HOGENOMiHOG000230831.
KOiK01601.
OMAiFECAGDP.
OrthoDBiEOG62K1SK.
PhylomeDBiQ6ND47.

Family and domain databases

Gene3Di3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
InterProiIPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
[Graphical view]
PfamiPF00016. RuBisCO_large. 2 hits.
[Graphical view]
SUPFAMiSSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.

Sequencei

Sequence statusi: Complete.

Q6ND47-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTPDDIAGFY AKRADLDLDN YIELDFDFEC AGDPHEAAAH LCSEQSTAQW
60 70 80 90 100
RRVGFDEDFR PRFAAKVLEL SAEPRPSGFS VPVECAARGP VHACRVTIAH
110 120 130 140 150
PHGNFGAKIP NLLSAVCGEG VFFSPGIPLI RLQDIRFPEP YLAAFDGPRF
160 170 180 190 200
GIAGVRERLQ AFDRPIFFGV IKPNIGLPPQ PFAELGYQSW TGGLDIAKDD
210 220 230 240 250
EMLADVDWCP LAERAALLGD ACRRASAETG VPKIYLANIT DEVDRLTELH
260 270 280 290 300
DVAVANGAGA LLINAMPVGL SAVRMLRKHA TVPLIAHFPF IAAFSRLANY
310 320 330 340 350
GIHSRVMTRL QRLAGFDVVI MPGFGPRMMT PEHEVLDCIR ACLEPMGPIK
360 370 380 390 400
PCLPVPGGSD SAATLENVYR KVGSADFGFV PGRGVFGHPM GPAAGATSIR
410 420 430
QAWDAIAAGI PVPDHAASHP ELAAALRAFG GR
Length:432
Mass (Da):46,464
Last modified:July 5, 2004 - v1
Checksum:i1C02E95D7430C620
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX572593 Genomic DNA. Translation: CAE25706.1.
RefSeqiNP_945615.1. NC_005296.1.
WP_011155830.1. NC_005296.1.

Genome annotation databases

EnsemblBacteriaiCAE25706; CAE25706; RPA0262.
KEGGirpa:RPA0262.
PATRICi23284653. VBIRhoPal84835_0277.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX572593 Genomic DNA. Translation: CAE25706.1.
RefSeqiNP_945615.1. NC_005296.1.
WP_011155830.1. NC_005296.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2QYGX-ray3.30A/B/C/D1-432[»]
ProteinModelPortaliQ6ND47.
SMRiQ6ND47. Positions 1-429.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi258594.RPA0262.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAE25706; CAE25706; RPA0262.
KEGGirpa:RPA0262.
PATRICi23284653. VBIRhoPal84835_0277.

Phylogenomic databases

eggNOGiCOG1850.
HOGENOMiHOG000230831.
KOiK01601.
OMAiFECAGDP.
OrthoDBiEOG62K1SK.
PhylomeDBiQ6ND47.

Miscellaneous databases

EvolutionaryTraceiQ6ND47.

Family and domain databases

Gene3Di3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
InterProiIPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
[Graphical view]
PfamiPF00016. RuBisCO_large. 2 hits.
[Graphical view]
SUPFAMiSSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-98 / CGA009.

Entry informationi

Entry nameiRBLL2_RHOPA
AccessioniPrimary (citable) accession number: Q6ND47
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 8, 2005
Last sequence update: July 5, 2004
Last modified: May 27, 2015
This is version 63 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.