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Protein

Ribulose bisphosphate carboxylase-like protein 2

Gene

rlp2

Organism
Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

May be involved in sulfur metabolism and oxidative stress response. Does not show RuBisCO activity (By similarity).By similarity

Cofactori

Mg2+By similarityNote: Binds 1 Mg2+ ion per subunit.By similarity

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi198Magnesium; via carbamate groupSequence analysis1
Metal bindingi200MagnesiumBy similarity1
Metal bindingi201MagnesiumBy similarity1

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

Magnesium, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Ribulose bisphosphate carboxylase-like protein 2
Short name:
RuBisCO-like protein
Gene namesi
Name:rlp2
Ordered Locus Names:RPA0262
OrganismiRhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)
Taxonomic identifieri258594 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas
Proteomesi
  • UP000001426 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000626831 – 432Ribulose bisphosphate carboxylase-like protein 2Add BLAST432

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei198N6-carboxylysineSequence analysis1

Interactioni

Subunit structurei

Homodimer.

Protein-protein interaction databases

STRINGi258594.RPA0262.

Structurei

Secondary structure

1432
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi4 – 9Combined sources6
Helixi13 – 15Combined sources3
Helixi18 – 20Combined sources3
Beta strandi21 – 32Combined sources12
Helixi34 – 45Combined sources12
Helixi60 – 63Combined sources4
Beta strandi66 – 74Combined sources9
Beta strandi91 – 101Combined sources11
Helixi102 – 104Combined sources3
Helixi109 – 116Combined sources8
Helixi119 – 122Combined sources4
Beta strandi129 – 136Combined sources8
Helixi139 – 142Combined sources4
Helixi151 – 159Combined sources9
Beta strandi166 – 170Combined sources5
Helixi180 – 192Combined sources13
Beta strandi195 – 198Combined sources4
Helixi211 – 229Combined sources19
Beta strandi234 – 238Combined sources5
Helixi245 – 255Combined sources11
Beta strandi260 – 264Combined sources5
Helixi265 – 268Combined sources4
Helixi270 – 277Combined sources8
Beta strandi284 – 287Combined sources4
Helixi291 – 295Combined sources5
Beta strandi300 – 302Combined sources3
Helixi304 – 314Combined sources11
Beta strandi317 – 321Combined sources5
Helixi326 – 328Combined sources3
Helixi332 – 343Combined sources12
Beta strandi353 – 356Combined sources4
Turni362 – 364Combined sources3
Helixi365 – 372Combined sources8
Turni383 – 387Combined sources5
Helixi392 – 407Combined sources16
Helixi412 – 416Combined sources5
Helixi420 – 428Combined sources9

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2QYGX-ray3.30A/B/C/D1-432[»]
ProteinModelPortaliQ6ND47.
SMRiQ6ND47.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ6ND47.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG4105DT1. Bacteria.
COG1850. LUCA.
HOGENOMiHOG000230831.
KOiK01601.
OMAiAHFPFIA.
OrthoDBiPOG091H0DKL.
PhylomeDBiQ6ND47.

Family and domain databases

Gene3Di3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
InterProiIPR033966. RuBisCO.
IPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
[Graphical view]
PfamiPF00016. RuBisCO_large. 1 hit.
PF02788. RuBisCO_large_N. 1 hit.
[Graphical view]
SUPFAMiSSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.

Sequencei

Sequence statusi: Complete.

Q6ND47-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTPDDIAGFY AKRADLDLDN YIELDFDFEC AGDPHEAAAH LCSEQSTAQW
60 70 80 90 100
RRVGFDEDFR PRFAAKVLEL SAEPRPSGFS VPVECAARGP VHACRVTIAH
110 120 130 140 150
PHGNFGAKIP NLLSAVCGEG VFFSPGIPLI RLQDIRFPEP YLAAFDGPRF
160 170 180 190 200
GIAGVRERLQ AFDRPIFFGV IKPNIGLPPQ PFAELGYQSW TGGLDIAKDD
210 220 230 240 250
EMLADVDWCP LAERAALLGD ACRRASAETG VPKIYLANIT DEVDRLTELH
260 270 280 290 300
DVAVANGAGA LLINAMPVGL SAVRMLRKHA TVPLIAHFPF IAAFSRLANY
310 320 330 340 350
GIHSRVMTRL QRLAGFDVVI MPGFGPRMMT PEHEVLDCIR ACLEPMGPIK
360 370 380 390 400
PCLPVPGGSD SAATLENVYR KVGSADFGFV PGRGVFGHPM GPAAGATSIR
410 420 430
QAWDAIAAGI PVPDHAASHP ELAAALRAFG GR
Length:432
Mass (Da):46,464
Last modified:July 5, 2004 - v1
Checksum:i1C02E95D7430C620
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX572593 Genomic DNA. Translation: CAE25706.1.
RefSeqiWP_011155830.1. NC_005296.1.

Genome annotation databases

EnsemblBacteriaiCAE25706; CAE25706; RPA0262.
KEGGirpa:RPA0262.
PATRICi23284653. VBIRhoPal84835_0277.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX572593 Genomic DNA. Translation: CAE25706.1.
RefSeqiWP_011155830.1. NC_005296.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2QYGX-ray3.30A/B/C/D1-432[»]
ProteinModelPortaliQ6ND47.
SMRiQ6ND47.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi258594.RPA0262.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAE25706; CAE25706; RPA0262.
KEGGirpa:RPA0262.
PATRICi23284653. VBIRhoPal84835_0277.

Phylogenomic databases

eggNOGiENOG4105DT1. Bacteria.
COG1850. LUCA.
HOGENOMiHOG000230831.
KOiK01601.
OMAiAHFPFIA.
OrthoDBiPOG091H0DKL.
PhylomeDBiQ6ND47.

Miscellaneous databases

EvolutionaryTraceiQ6ND47.

Family and domain databases

Gene3Di3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
InterProiIPR033966. RuBisCO.
IPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
[Graphical view]
PfamiPF00016. RuBisCO_large. 1 hit.
PF02788. RuBisCO_large_N. 1 hit.
[Graphical view]
SUPFAMiSSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiRBLL2_RHOPA
AccessioniPrimary (citable) accession number: Q6ND47
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 8, 2005
Last sequence update: July 5, 2004
Last modified: November 30, 2016
This is version 70 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.