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Q6ND47

- RBLL2_RHOPA

UniProt

Q6ND47 - RBLL2_RHOPA

Protein

Ribulose bisphosphate carboxylase-like protein 2

Gene

rlp2

Organism
Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 58 (01 Oct 2014)
      Sequence version 1 (05 Jul 2004)
      Previous versions | rss
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    Functioni

    May be involved in sulfur metabolism and oxidative stress response. Does not show RuBisCO activity By similarity.By similarity

    Cofactori

    Binds 1 magnesium ion per subunit.By similarity

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Metal bindingi198 – 1981Magnesium; via carbamate groupSequence Analysis
    Metal bindingi200 – 2001MagnesiumBy similarity
    Metal bindingi201 – 2011MagnesiumBy similarity

    GO - Molecular functioni

    1. magnesium ion binding Source: InterPro
    2. ribulose-bisphosphate carboxylase activity Source: InterPro

    GO - Biological processi

    1. carbon fixation Source: InterPro

    Keywords - Ligandi

    Magnesium, Metal-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Ribulose bisphosphate carboxylase-like protein 2
    Short name:
    RuBisCO-like protein
    Gene namesi
    Name:rlp2
    Ordered Locus Names:RPA0262
    OrganismiRhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)
    Taxonomic identifieri258594 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas
    ProteomesiUP000001426: Chromosome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 432432Ribulose bisphosphate carboxylase-like protein 2PRO_0000062683Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Modified residuei198 – 1981N6-carboxylysineSequence Analysis

    Interactioni

    Subunit structurei

    Homodimer.

    Protein-protein interaction databases

    STRINGi258594.RPA0262.

    Structurei

    Secondary structure

    1
    432
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Helixi4 – 96
    Helixi13 – 153
    Helixi18 – 203
    Beta strandi21 – 3212
    Helixi34 – 4512
    Helixi60 – 634
    Beta strandi66 – 749
    Beta strandi91 – 10111
    Helixi102 – 1043
    Helixi109 – 1168
    Helixi119 – 1224
    Beta strandi129 – 1368
    Helixi139 – 1424
    Helixi151 – 1599
    Beta strandi166 – 1705
    Helixi180 – 19213
    Beta strandi195 – 1984
    Helixi211 – 22919
    Beta strandi234 – 2385
    Helixi245 – 25511
    Beta strandi260 – 2645
    Helixi265 – 2684
    Helixi270 – 2778
    Beta strandi284 – 2874
    Helixi291 – 2955
    Beta strandi300 – 3023
    Helixi304 – 31411
    Beta strandi317 – 3215
    Helixi326 – 3283
    Helixi332 – 34312
    Beta strandi353 – 3564
    Turni362 – 3643
    Helixi365 – 3728
    Turni383 – 3875
    Helixi392 – 40716
    Helixi412 – 4165
    Helixi420 – 4289

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    2QYGX-ray3.30A/B/C/D1-432[»]
    ProteinModelPortaliQ6ND47.
    SMRiQ6ND47. Positions 1-429.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiQ6ND47.

    Family & Domainsi

    Sequence similaritiesi

    Phylogenomic databases

    eggNOGiCOG1850.
    HOGENOMiHOG000230831.
    KOiK01601.
    OMAiFECAGDP.
    OrthoDBiEOG62K1SK.
    PhylomeDBiQ6ND47.

    Family and domain databases

    Gene3Di3.20.20.110. 1 hit.
    3.30.70.150. 1 hit.
    InterProiIPR000685. RuBisCO_lsu_C.
    IPR017443. RuBisCO_lsu_fd_N.
    [Graphical view]
    PfamiPF00016. RuBisCO_large. 2 hits.
    [Graphical view]
    SUPFAMiSSF51649. SSF51649. 1 hit.
    SSF54966. SSF54966. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q6ND47-1 [UniParc]FASTAAdd to Basket

    « Hide

    MTPDDIAGFY AKRADLDLDN YIELDFDFEC AGDPHEAAAH LCSEQSTAQW    50
    RRVGFDEDFR PRFAAKVLEL SAEPRPSGFS VPVECAARGP VHACRVTIAH 100
    PHGNFGAKIP NLLSAVCGEG VFFSPGIPLI RLQDIRFPEP YLAAFDGPRF 150
    GIAGVRERLQ AFDRPIFFGV IKPNIGLPPQ PFAELGYQSW TGGLDIAKDD 200
    EMLADVDWCP LAERAALLGD ACRRASAETG VPKIYLANIT DEVDRLTELH 250
    DVAVANGAGA LLINAMPVGL SAVRMLRKHA TVPLIAHFPF IAAFSRLANY 300
    GIHSRVMTRL QRLAGFDVVI MPGFGPRMMT PEHEVLDCIR ACLEPMGPIK 350
    PCLPVPGGSD SAATLENVYR KVGSADFGFV PGRGVFGHPM GPAAGATSIR 400
    QAWDAIAAGI PVPDHAASHP ELAAALRAFG GR 432
    Length:432
    Mass (Da):46,464
    Last modified:July 5, 2004 - v1
    Checksum:i1C02E95D7430C620
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BX572593 Genomic DNA. Translation: CAE25706.1.
    RefSeqiNP_945615.1. NC_005296.1.

    Genome annotation databases

    EnsemblBacteriaiCAE25706; CAE25706; RPA0262.
    GeneIDi2689874.
    KEGGirpa:RPA0262.
    PATRICi23284653. VBIRhoPal84835_0277.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BX572593 Genomic DNA. Translation: CAE25706.1 .
    RefSeqi NP_945615.1. NC_005296.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    2QYG X-ray 3.30 A/B/C/D 1-432 [» ]
    ProteinModelPortali Q6ND47.
    SMRi Q6ND47. Positions 1-429.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 258594.RPA0262.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai CAE25706 ; CAE25706 ; RPA0262 .
    GeneIDi 2689874.
    KEGGi rpa:RPA0262.
    PATRICi 23284653. VBIRhoPal84835_0277.

    Phylogenomic databases

    eggNOGi COG1850.
    HOGENOMi HOG000230831.
    KOi K01601.
    OMAi FECAGDP.
    OrthoDBi EOG62K1SK.
    PhylomeDBi Q6ND47.

    Miscellaneous databases

    EvolutionaryTracei Q6ND47.

    Family and domain databases

    Gene3Di 3.20.20.110. 1 hit.
    3.30.70.150. 1 hit.
    InterProi IPR000685. RuBisCO_lsu_C.
    IPR017443. RuBisCO_lsu_fd_N.
    [Graphical view ]
    Pfami PF00016. RuBisCO_large. 2 hits.
    [Graphical view ]
    SUPFAMi SSF51649. SSF51649. 1 hit.
    SSF54966. SSF54966. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC BAA-98 / CGA009.

    Entry informationi

    Entry nameiRBLL2_RHOPA
    AccessioniPrimary (citable) accession number: Q6ND47
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 8, 2005
    Last sequence update: July 5, 2004
    Last modified: October 1, 2014
    This is version 58 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome, Reference proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3