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Q6ND47

- RBLL2_RHOPA

UniProt

Q6ND47 - RBLL2_RHOPA

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Protein

Ribulose bisphosphate carboxylase-like protein 2

Gene

rlp2

Organism
Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli

Functioni

May be involved in sulfur metabolism and oxidative stress response. Does not show RuBisCO activity By similarity.By similarity

Cofactori

Binds 1 magnesium ion per subunit.By similarity

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi198 – 1981Magnesium; via carbamate groupSequence Analysis
Metal bindingi200 – 2001MagnesiumBy similarity
Metal bindingi201 – 2011MagnesiumBy similarity

GO - Molecular functioni

  1. magnesium ion binding Source: InterPro
  2. ribulose-bisphosphate carboxylase activity Source: InterPro

GO - Biological processi

  1. carbon fixation Source: InterPro
Complete GO annotation...

Keywords - Ligandi

Magnesium, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Ribulose bisphosphate carboxylase-like protein 2
Short name:
RuBisCO-like protein
Gene namesi
Name:rlp2
Ordered Locus Names:RPA0262
OrganismiRhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)
Taxonomic identifieri258594 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas
ProteomesiUP000001426: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 432432Ribulose bisphosphate carboxylase-like protein 2PRO_0000062683Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei198 – 1981N6-carboxylysineSequence Analysis

Interactioni

Subunit structurei

Homodimer.

Protein-protein interaction databases

STRINGi258594.RPA0262.

Structurei

Secondary structure

1
432
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi4 – 96
Helixi13 – 153
Helixi18 – 203
Beta strandi21 – 3212
Helixi34 – 4512
Helixi60 – 634
Beta strandi66 – 749
Beta strandi91 – 10111
Helixi102 – 1043
Helixi109 – 1168
Helixi119 – 1224
Beta strandi129 – 1368
Helixi139 – 1424
Helixi151 – 1599
Beta strandi166 – 1705
Helixi180 – 19213
Beta strandi195 – 1984
Helixi211 – 22919
Beta strandi234 – 2385
Helixi245 – 25511
Beta strandi260 – 2645
Helixi265 – 2684
Helixi270 – 2778
Beta strandi284 – 2874
Helixi291 – 2955
Beta strandi300 – 3023
Helixi304 – 31411
Beta strandi317 – 3215
Helixi326 – 3283
Helixi332 – 34312
Beta strandi353 – 3564
Turni362 – 3643
Helixi365 – 3728
Turni383 – 3875
Helixi392 – 40716
Helixi412 – 4165
Helixi420 – 4289

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2QYGX-ray3.30A/B/C/D1-432[»]
ProteinModelPortaliQ6ND47.
SMRiQ6ND47. Positions 1-429.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ6ND47.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG1850.
HOGENOMiHOG000230831.
KOiK01601.
OMAiFECAGDP.
OrthoDBiEOG62K1SK.
PhylomeDBiQ6ND47.

Family and domain databases

Gene3Di3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
InterProiIPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
[Graphical view]
PfamiPF00016. RuBisCO_large. 2 hits.
[Graphical view]
SUPFAMiSSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.

Sequencei

Sequence statusi: Complete.

Q6ND47-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MTPDDIAGFY AKRADLDLDN YIELDFDFEC AGDPHEAAAH LCSEQSTAQW
60 70 80 90 100
RRVGFDEDFR PRFAAKVLEL SAEPRPSGFS VPVECAARGP VHACRVTIAH
110 120 130 140 150
PHGNFGAKIP NLLSAVCGEG VFFSPGIPLI RLQDIRFPEP YLAAFDGPRF
160 170 180 190 200
GIAGVRERLQ AFDRPIFFGV IKPNIGLPPQ PFAELGYQSW TGGLDIAKDD
210 220 230 240 250
EMLADVDWCP LAERAALLGD ACRRASAETG VPKIYLANIT DEVDRLTELH
260 270 280 290 300
DVAVANGAGA LLINAMPVGL SAVRMLRKHA TVPLIAHFPF IAAFSRLANY
310 320 330 340 350
GIHSRVMTRL QRLAGFDVVI MPGFGPRMMT PEHEVLDCIR ACLEPMGPIK
360 370 380 390 400
PCLPVPGGSD SAATLENVYR KVGSADFGFV PGRGVFGHPM GPAAGATSIR
410 420 430
QAWDAIAAGI PVPDHAASHP ELAAALRAFG GR
Length:432
Mass (Da):46,464
Last modified:July 5, 2004 - v1
Checksum:i1C02E95D7430C620
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BX572593 Genomic DNA. Translation: CAE25706.1.
RefSeqiNP_945615.1. NC_005296.1.
WP_011155830.1. NC_005296.1.

Genome annotation databases

EnsemblBacteriaiCAE25706; CAE25706; RPA0262.
GeneIDi2689874.
KEGGirpa:RPA0262.
PATRICi23284653. VBIRhoPal84835_0277.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BX572593 Genomic DNA. Translation: CAE25706.1 .
RefSeqi NP_945615.1. NC_005296.1.
WP_011155830.1. NC_005296.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
2QYG X-ray 3.30 A/B/C/D 1-432 [» ]
ProteinModelPortali Q6ND47.
SMRi Q6ND47. Positions 1-429.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 258594.RPA0262.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CAE25706 ; CAE25706 ; RPA0262 .
GeneIDi 2689874.
KEGGi rpa:RPA0262.
PATRICi 23284653. VBIRhoPal84835_0277.

Phylogenomic databases

eggNOGi COG1850.
HOGENOMi HOG000230831.
KOi K01601.
OMAi FECAGDP.
OrthoDBi EOG62K1SK.
PhylomeDBi Q6ND47.

Miscellaneous databases

EvolutionaryTracei Q6ND47.

Family and domain databases

Gene3Di 3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
InterProi IPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
[Graphical view ]
Pfami PF00016. RuBisCO_large. 2 hits.
[Graphical view ]
SUPFAMi SSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-98 / CGA009.

Entry informationi

Entry nameiRBLL2_RHOPA
AccessioniPrimary (citable) accession number: Q6ND47
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 8, 2005
Last sequence update: July 5, 2004
Last modified: October 29, 2014
This is version 59 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3