Q6N6X8 (Q6N6X8_RHOPA) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA topoisomerase EMBL CAE27927.1
EC=5.99.1.3 EMBL CAE27927.1

Gene names

Name:	parE EMBL CAE27927.1
Ordered Locus Names:	RPA2486

Organism

Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) [Complete proteome] [HAMAP]

Taxonomic identifier

258594 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Bradyrhizobiaceae › Rhodopseudomonas

Protein attributes

Sequence length	683 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the type II topoisomerase family. RuleBase RU000380

Ontologies

Keywords
Ligand	ATP-binding RuleBase RU000380 SAAS SAAS002288 Nucleotide-binding
Molecular function	Isomerase Topoisomerase RuleBase RU000380 SAAS SAAS002288
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	DNA topological change Inferred from electronic annotation. Source: InterPro
Cellular component	chromosome Inferred from electronic annotation. Source: InterPro
Molecular function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW DNA topoisomerase (ATP-hydrolyzing) activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q6N6X8 [UniParc]. Last modified July 5, 2004. Version 1. Checksum: DAD7F52487B110E0	FASTA	683	74,364
	10 20 30 40 50 60 MAKALKASSK SKSGDDLFEG APKSAAPKAP AKPSGAEDGY TAADIEVLEG LEPVRRRPGM 70 80 90 100 110 120 YIGGTDEKAL HHLFAEVIDN SMDEALAGHA TFIEVELTAD GFLTVSDNGR GIPVDPHPKF 130 140 150 160 170 180 PKKSALEVIM CTLHAGGKFD SKVYETSGGL HGVGVSVVNA LSSRLEVEVA RGQQLHRMVF 190 200 210 220 230 240 ERGHPKGKLE SLGKVNNRRG TRVRFKPDTE IFGAKAAFKP QRLFKMARSK AYLFGGVKIR 250 260 270 280 290 300 WKCDPELLKG IEDVPAEDEF HFPGGLKDFL GAAIHNDTLV HPDIFAGKSG RNGAHGACEW 310 320 330 340 350 360 AAAWTADADG FLSSYCNTVP TPDGGTHESG LRSALLRGLK DHAERAGQGK RASSITSEDV 370 380 390 400 410 420 MVGAAIMLSV FVREPEFQGQ TKDRLATAEA QKIVEQAIKD PFDHWLSGNP VQANKLLDFV 430 440 450 460 470 480 IERAEERLRR RQEKEISRKT AVKKLRLPGK LADCTSTAAE GSELFIVEGD SAGGSAKQAR 490 500 510 520 530 540 DRSTQAVLPL RGKILNVASA GKDKVVANAQ LSDLIQALGV STGVNYREED LRYSRIIIMT 550 560 570 580 590 600 DADVDGAHIA SLLITFFYRQ MPKLIDEGHL YLAVPPLYRL THGAKTVYAR DDAHKEELLK 610 620 630 640 650 660 KEFNANAKVE VGRFKGLGEM MPAQLKETTM DPAKRTMLRV VLLPDDRDGT ANSVERLMGT 670 680 KAEARFAFIS EKAEFASDEL LDV

References

[1]

"Complete genome sequence of the metabolically versatile photosynthetic bacterium Rhodopseudomonas palustris." Larimer F.W., Chain P., Hauser L., Lamerdin J.E., Malfatti S., Do L., Land M.L., Pelletier D.A., Beatty J.T., Lang A.S., Tabita F.R., Gibson J.L., Hanson T.E., Bobst C., Torres y Torres J.L., Peres C., Harrison F.H., Gibson J., Harwood C.S. Nat. Biotechnol. 22:55-61(2004) [PubMed: 14704707] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC BAA-98 / CGA009.

Cross-references

Sequence databases
EMBL GenBank DDBJ	BX572601 Genomic DNA. Translation: CAE27927.1.
RefSeq	NP_947828.1. NC_005296.1.
3D structure databases
HSSP	HSSP built from PDB template 1AJ6 based on UniProtKB P06982.
ProteinModelPortal	Q6N6X8.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	2690231.
GenomeReviews	Gene locus RPA2486 in contig BX571963_GR.
KEGG	rpa:RPA2486.
NMPDR	fig|258594.1.peg.2471.
PATRIC	23289371. VBIRhoPal84835_2619.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG304889.
OMA	QARDKEF.
ProtClustDB	PRK05559.
Enzyme and pathway databases
BioCyc	RPAL258594:RPA2486-MONOMER.
Family and domain databases
InterPro	IPR003594. ATPase-like_ATP-bd. IPR020568. Ribosomal_S5_D2-typ_fold. IPR014721. Ribosomal_S5_D2-typ_fold_subgr. IPR001241. Topo_IIA. IPR013759. Topo_IIA_B/N_ab. IPR002288. Topo_IIA_B_C. IPR013506. Topo_IIA_bsu_dom2. IPR013760. Topo_IIA_cen. IPR018522. TopoIIA_CS. IPR005737. TopoIV_B_Gneg. IPR006171. Toprim_domain. [Graphical view]
Gene3D	G3DSA:3.30.565.10. ATP_bd_ATPase. 1 hit. G3DSA:3.30.230.10. Ribosomal_S5_D2-type_fold. 1 hit. G3DSA:3.40.50.670. Topo_IIA_B/N_ab. 1 hit.
KO	K02622.
Pfam	PF00204. DNA_gyraseB. 1 hit. PF00986. DNA_gyraseB_C. 1 hit. PF02518. HATPase_c. 1 hit. PF01751. Toprim. 1 hit. [Graphical view]
PRINTS	PR00418. TPI2FAMILY.
SMART	SM00387. HATPase_c. 1 hit. SM00433. TOP2c. 1 hit. [Graphical view]
SUPFAM	SSF55874. ATP_bd_ATPase. 1 hit. SSF54211. Ribosomal_S5_D2-typ_fold. 1 hit. SSF56719. Topo_IIA_cen. 1 hit.
TIGRFAMs	TIGR01055. ParE_Gneg. 1 hit.
PROSITE	PS00177. TOPOISOMERASE_II. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q6N6X8_RHOPA

Accession

Primary (citable) accession number: Q6N6X8

Entry history

Integrated into UniProtKB/TrEMBL:	July 5, 2004
Last sequence update:	July 5, 2004
Last modified:	January 25, 2012
This is version 58 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)