Q6N5A4 (RS6_RHOPA) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
30S ribosomal protein S6

Alternative name(s):
RRP-S6

Gene names

Name:	rpsF
Ordered Locus Names:	RPA3077

Organism

Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) [Complete proteome] [HAMAP]

Taxonomic identifier

258594 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Bradyrhizobiaceae › Rhodopseudomonas

Protein attributes

Sequence length	158 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

General annotation (Comments)

Function	Binds together with S18 to 16S ribosomal RNA By similarity. HAMAP MF_00360
Miscellaneous	The initiator methionine may be removed. HAMAP MF_00360
Sequence similarities	Belongs to the ribosomal protein S6P family.

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	translation Inferred from electronic annotation. Source: InterPro
Cellular component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	rRNA binding Inferred from electronic annotation. Source: UniProtKB-KW structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 158	158	30S ribosomal protein S6 HAMAP MF_00360		PRO_0000176827

Sequences

	Sequence		Length	Mass (Da)
	Q6N5A4 [UniParc]. Last modified July 5, 2004. Version 1. Checksum: EA6A916B3867EB7C	FASTA	158	17,932
	10 20 30 40 50 60 MPLYEHVFLA RQDASAQQVE ELTTQITGVI EGLGGKVTKT ESWGLRSLTY RMNKNRKAHF 70 80 90 100 110 120 VLLNIDGPAA VVSEIERQER INEDVIRYLT VRVDEHEEGP SAMMRKADRD RERDDRGPRE 130 140 150 GGFRGDREGR GDRDGFRGDR GPRRPREDAD APAAAVEE

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Complete genome sequence of the metabolically versatile photosynthetic bacterium Rhodopseudomonas palustris." Larimer F.W., Chain P., Hauser L., Lamerdin J.E., Malfatti S., Do L., Land M.L., Pelletier D.A., Beatty J.T., Lang A.S., Tabita F.R., Gibson J.L., Hanson T.E., Bobst C., Torres y Torres J.L., Peres C., Harrison F.H., Gibson J., Harwood C.S. Nat. Biotechnol. 22:55-61(2004) [PubMed: 14704707] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC BAA-98 / CGA009.
[2]	"Characterization of the 70S ribosome from Rhodopseudomonas palustris using an integrated 'top-down' and 'bottom-up' mass spectrometric approach." Strader M.B., VerBerkmoes N.C., Tabb D.L., Connelly H.M., Barton J.W., Bruce B.D., Pelletier D.A., Davison B.H., Hettich R.L., Larimer F.W., Hurst G.B. J. Proteome Res. 3:965-978(2004) [PubMed: 15473684] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY. Strain: ATCC BAA-98 / CGA009.

Cross-references

Sequence databases
EMBL GenBank DDBJ	BX572602 Genomic DNA. Translation: CAE28518.1.
RefSeq	NP_948416.1. NC_005296.1.
3D structure databases
ProteinModelPortal	Q6N5A4.
ModBase	Search...
Protein-protein interaction databases
IntAct	Q6N5A4. 1 interaction.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	2690703.
GenomeReviews	Gene locus RPA3077 in contig BX571963_GR.
KEGG	rpa:RPA3077.
NMPDR	fig|258594.1.peg.3059.
PATRIC	23290623. VBIRhoPal84835_3235.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG747554.
OMA	ITEASPM.
ProtClustDB	PRK00453.
Enzyme and pathway databases
BioCyc	RPAL258594:RPA3077-MONOMER.
Family and domain databases
HAMAP	MF_00360. Ribosomal_S6. [Tree]
InterPro	IPR000529. Ribosomal_S6. IPR020814. Ribosomal_S6_plastid/chlpt. IPR014717. Transl_elong_EF1B/ribosomal_S6. [Graphical view]
Gene3D	G3DSA:3.30.70.60. Transl_elong_EF1B/rib_con. 1 hit.
KO	K02990.
Pfam	PF01250. Ribosomal_S6. 1 hit. [Graphical view]
SUPFAM	SSF54995. Ribosomal_S6. 1 hit.
TIGRFAMs	TIGR00166. S6. 1 hit.
PROSITE	PS01048. RIBOSOMAL_S6. False negative. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

RS6_RHOPA

Accession

Primary (citable) accession number: Q6N5A4

Entry history

Integrated into UniProtKB/Swiss-Prot:	March 15, 2005
Last sequence update:	July 5, 2004
Last modified:	January 25, 2012
This is version 41 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program