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Protein
Submitted name:

YcfI, putative structural proteins

Gene

RPA3308

Organism
Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi12 – 121Zinc 1Combined sources
Metal bindingi21 – 211Iron 1Combined sources
Metal bindingi26 – 261Iron 2Combined sources
Metal bindingi26 – 261Zinc 2Combined sources
Metal bindingi52 – 521Iron 3; via tele nitrogenCombined sources
Metal bindingi52 – 521Zinc 3; via tele nitrogenCombined sources
Metal bindingi59 – 591Iron 2Combined sources
Metal bindingi59 – 591Zinc 2Combined sources
Metal bindingi79 – 791Iron 1Combined sources
Metal bindingi114 – 1141Iron 3Combined sources
Metal bindingi114 – 1141Zinc 3Combined sources
Metal bindingi116 – 1161Iron 1Combined sources
Metal bindingi117 – 1171Iron 2Combined sources
Metal bindingi117 – 1171Iron 3Combined sources
Metal bindingi117 – 1171Zinc 2Combined sources
Metal bindingi133 – 1331Zinc 1; via tele nitrogenCombined sources
Metal bindingi147 – 1471Iron 2Combined sources
Metal bindingi147 – 1471Iron 3Combined sources
Metal bindingi147 – 1471Zinc 2Combined sources

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

IronCombined sources, Metal-bindingCombined sources, ZincCombined sources

Names & Taxonomyi

Protein namesi
Submitted name:
YcfI, putative structural proteinsImported
Gene namesi
Ordered Locus Names:RPA3308Imported
OrganismiRhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)Imported
Taxonomic identifieri258594 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas
Proteomesi
  • UP000001426 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi258594.RPA3308.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2GYQX-ray1.40A/B1-169[»]
ProteinModelPortaliQ6N4M9.
SMRiQ6N4M9. Positions 1-160.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ6N4M9.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini10 – 167158DUF892InterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiENOG4108Z9Z. Bacteria.
COG3685. LUCA.
HOGENOMiHOG000025592.
OMAiEQATNRD.
OrthoDBiPOG091H0M9X.
PhylomeDBiQ6N4M9.

Family and domain databases

Gene3Di1.20.1260.10. 1 hit.
InterProiIPR010287. DUF892.
IPR009078. Ferritin-like_SF.
IPR012347. Ferritin-rel.
[Graphical view]
PfamiPF05974. DUF892. 1 hit.
[Graphical view]
SUPFAMiSSF47240. SSF47240. 1 hit.

Sequencei

Sequence statusi: Complete.

Q6N4M9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGFFSRDIQT MEDLLLHGLR DIYYAEQQIT KALPKMIEQA TNRDLSQGLT
60 70 80 90 100
SHLEETQKQI ERLDQVFKKL GQKPSGVNCP AIDGLIKEAD ETAGEIADKT
110 120 130 140 150
VLDAAIVANA QAVEHYEIAR YGTLIAWAEE LGHDDIVRFL TTNLNEEKAA
160
NTKLNTVALR KGVNRKAAS
Length:169
Mass (Da):18,795
Last modified:July 5, 2004 - v1
Checksum:iAC435B01FE3BBE47
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX572603 Genomic DNA. Translation: CAE28749.1.
RefSeqiWP_011158850.1. NC_005296.1.

Genome annotation databases

EnsemblBacteriaiCAE28749; CAE28749; RPA3308.
KEGGirpa:RPA3308.
PATRICi23291111. VBIRhoPal84835_3475.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX572603 Genomic DNA. Translation: CAE28749.1.
RefSeqiWP_011158850.1. NC_005296.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2GYQX-ray1.40A/B1-169[»]
ProteinModelPortaliQ6N4M9.
SMRiQ6N4M9. Positions 1-160.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi258594.RPA3308.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAE28749; CAE28749; RPA3308.
KEGGirpa:RPA3308.
PATRICi23291111. VBIRhoPal84835_3475.

Phylogenomic databases

eggNOGiENOG4108Z9Z. Bacteria.
COG3685. LUCA.
HOGENOMiHOG000025592.
OMAiEQATNRD.
OrthoDBiPOG091H0M9X.
PhylomeDBiQ6N4M9.

Miscellaneous databases

EvolutionaryTraceiQ6N4M9.

Family and domain databases

Gene3Di1.20.1260.10. 1 hit.
InterProiIPR010287. DUF892.
IPR009078. Ferritin-like_SF.
IPR012347. Ferritin-rel.
[Graphical view]
PfamiPF05974. DUF892. 1 hit.
[Graphical view]
SUPFAMiSSF47240. SSF47240. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiQ6N4M9_RHOPA
AccessioniPrimary (citable) accession number: Q6N4M9
Entry historyi
Integrated into UniProtKB/TrEMBL: July 5, 2004
Last sequence update: July 5, 2004
Last modified: September 7, 2016
This is version 74 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.