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Protein
Submitted name:

YcfI, putative structural proteins

Gene

RPA3308

Organism
Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi12Zinc 1Combined sources1
Metal bindingi21Iron 1Combined sources1
Metal bindingi26Iron 2Combined sources1
Metal bindingi26Zinc 2Combined sources1
Metal bindingi52Iron 3; via tele nitrogenCombined sources1
Metal bindingi52Zinc 3; via tele nitrogenCombined sources1
Metal bindingi59Iron 2Combined sources1
Metal bindingi59Zinc 2Combined sources1
Metal bindingi79Iron 1Combined sources1
Metal bindingi114Iron 3Combined sources1
Metal bindingi114Zinc 3Combined sources1
Metal bindingi116Iron 1Combined sources1
Metal bindingi117Iron 2Combined sources1
Metal bindingi117Iron 3Combined sources1
Metal bindingi117Zinc 2Combined sources1
Metal bindingi133Zinc 1; via tele nitrogenCombined sources1
Metal bindingi147Iron 2Combined sources1
Metal bindingi147Iron 3Combined sources1
Metal bindingi147Zinc 2Combined sources1

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

IronCombined sources, Metal-bindingCombined sources, ZincCombined sources

Enzyme and pathway databases

BioCyciRPAL258594:G13CN-3332-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
YcfI, putative structural proteinsImported
Gene namesi
Ordered Locus Names:RPA3308Imported
OrganismiRhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)Imported
Taxonomic identifieri258594 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas
Proteomesi
  • UP000001426 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi258594.RPA3308.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2GYQX-ray1.40A/B1-169[»]
ProteinModelPortaliQ6N4M9.
SMRiQ6N4M9.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ6N4M9.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini10 – 167DUF892InterPro annotationAdd BLAST158

Phylogenomic databases

eggNOGiENOG4108Z9Z. Bacteria.
COG3685. LUCA.
HOGENOMiHOG000025592.
OMAiEQATNRD.
OrthoDBiPOG091H0M9X.
PhylomeDBiQ6N4M9.

Family and domain databases

Gene3Di1.20.1260.10. 1 hit.
InterProiIPR010287. DUF892.
IPR009078. Ferritin-like_SF.
IPR012347. Ferritin-rel.
[Graphical view]
PfamiPF05974. DUF892. 1 hit.
[Graphical view]
SUPFAMiSSF47240. SSF47240. 1 hit.

Sequencei

Sequence statusi: Complete.

Q6N4M9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGFFSRDIQT MEDLLLHGLR DIYYAEQQIT KALPKMIEQA TNRDLSQGLT
60 70 80 90 100
SHLEETQKQI ERLDQVFKKL GQKPSGVNCP AIDGLIKEAD ETAGEIADKT
110 120 130 140 150
VLDAAIVANA QAVEHYEIAR YGTLIAWAEE LGHDDIVRFL TTNLNEEKAA
160
NTKLNTVALR KGVNRKAAS
Length:169
Mass (Da):18,795
Last modified:July 5, 2004 - v1
Checksum:iAC435B01FE3BBE47
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX572603 Genomic DNA. Translation: CAE28749.1.
RefSeqiWP_011158850.1. NC_005296.1.

Genome annotation databases

EnsemblBacteriaiCAE28749; CAE28749; RPA3308.
KEGGirpa:RPA3308.
PATRICi23291111. VBIRhoPal84835_3475.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX572603 Genomic DNA. Translation: CAE28749.1.
RefSeqiWP_011158850.1. NC_005296.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2GYQX-ray1.40A/B1-169[»]
ProteinModelPortaliQ6N4M9.
SMRiQ6N4M9.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi258594.RPA3308.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAE28749; CAE28749; RPA3308.
KEGGirpa:RPA3308.
PATRICi23291111. VBIRhoPal84835_3475.

Phylogenomic databases

eggNOGiENOG4108Z9Z. Bacteria.
COG3685. LUCA.
HOGENOMiHOG000025592.
OMAiEQATNRD.
OrthoDBiPOG091H0M9X.
PhylomeDBiQ6N4M9.

Enzyme and pathway databases

BioCyciRPAL258594:G13CN-3332-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ6N4M9.

Family and domain databases

Gene3Di1.20.1260.10. 1 hit.
InterProiIPR010287. DUF892.
IPR009078. Ferritin-like_SF.
IPR012347. Ferritin-rel.
[Graphical view]
PfamiPF05974. DUF892. 1 hit.
[Graphical view]
SUPFAMiSSF47240. SSF47240. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiQ6N4M9_RHOPA
AccessioniPrimary (citable) accession number: Q6N4M9
Entry historyi
Integrated into UniProtKB/TrEMBL: July 5, 2004
Last sequence update: July 5, 2004
Last modified: November 2, 2016
This is version 76 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.