Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Putative D-alanyl-D-alanine ligase A

Gene

ddlA

Organism
Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionLigaseSAAS annotationImported
Biological processCell shape, Cell wall biogenesis/degradationSAAS annotation, Peptidoglycan synthesisSAAS annotation
LigandATP-bindingPROSITE-ProRule annotationSAAS annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Submitted name:
Putative D-alanyl-D-alanine ligase AImported (EC:6.3.2.4Imported)
Gene namesi
Name:ddlAImported
Ordered Locus Names:RPA3525Imported
OrganismiRhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)Imported
Taxonomic identifieri258594 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas
Proteomesi
  • UP000001426 Componenti: Chromosome

Subcellular locationi

  • Cytoplasm SAAS annotation

GO - Cellular componenti

Interactioni

Protein-protein interaction databases

STRINGi258594.RPA3525.

Structurei

3D structure databases

ProteinModelPortaliQ6N415.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini128 – 321ATP-graspInterPro annotationAdd BLAST194

Sequence similaritiesi

Belongs to the D-alanine--D-alanine ligase family.SAAS annotation

Phylogenomic databases

eggNOGiENOG4105CPF. Bacteria.
COG1181. LUCA.
HOGENOMiHOG000011592.
KOiK01921.
OMAiEICPGRF.
OrthoDBiPOG091H00GT.
PhylomeDBiQ6N415.

Family and domain databases

InterProiView protein in InterPro
IPR011761. ATP-grasp.
IPR000291. D-Ala_lig_Van_CS.
IPR011095. Dala_Dala_lig_C.
IPR011127. Dala_Dala_lig_N.
IPR016185. PreATP-grasp_dom.
PfamiView protein in Pfam
PF07478. Dala_Dala_lig_C. 1 hit.
PF01820. Dala_Dala_lig_N. 1 hit.
SUPFAMiSSF52440. SSF52440. 1 hit.
PROSITEiView protein in PROSITE
PS50975. ATP_GRASP. 1 hit.
PS00844. DALA_DALA_LIGASE_2. 1 hit.

Sequencei

Sequence statusi: Complete.

Q6N415-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRHTILFGGT SKERLVSVAS AQALHSALPD ADLWFWNDDD RVHAVSAQAL
60 70 80 90 100
LAHARPFEEA FVPDGEDIGP LETALDRAAA EQRLLVLGLH GGVAENGELQ
110 120 130 140 150
AMCELRRVPF TGSGSAASHL AFDKVAAKRF AAIAGVRTVT GIALADAEAA
160 170 180 190 200
LEAHGRLIAK PACDGSSYGL FFINAKQDLV AVRHAAKTED YLIEPFVAGV
210 220 230 240 250
EATCGVLEAE DGSLRALPPI EIVPADGGFD YTAKYLAKST QEICPGRFAP
260 270 280 290 300
EIASAIMDYA VRAHRVMSCR GYSRSDFIVG KDGPIFLETN TLPGLTKASL
310 320
YPKALNALGI PFVDFLRGQI ALAERAVRS
Length:329
Mass (Da):35,057
Last modified:July 5, 2004 - v1
Checksum:i3C2CAACFC4F65AFF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX572604 Genomic DNA. Translation: CAE28966.1.
RefSeqiWP_011159065.1. NC_005296.1.

Genome annotation databases

EnsemblBacteriaiCAE28966; CAE28966; RPA3525.
KEGGirpa:RPA3525.
PATRICi23291571. VBIRhoPal84835_3701.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX572604 Genomic DNA. Translation: CAE28966.1.
RefSeqiWP_011159065.1. NC_005296.1.

3D structure databases

ProteinModelPortaliQ6N415.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi258594.RPA3525.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAE28966; CAE28966; RPA3525.
KEGGirpa:RPA3525.
PATRICi23291571. VBIRhoPal84835_3701.

Phylogenomic databases

eggNOGiENOG4105CPF. Bacteria.
COG1181. LUCA.
HOGENOMiHOG000011592.
KOiK01921.
OMAiEICPGRF.
OrthoDBiPOG091H00GT.
PhylomeDBiQ6N415.

Family and domain databases

InterProiView protein in InterPro
IPR011761. ATP-grasp.
IPR000291. D-Ala_lig_Van_CS.
IPR011095. Dala_Dala_lig_C.
IPR011127. Dala_Dala_lig_N.
IPR016185. PreATP-grasp_dom.
PfamiView protein in Pfam
PF07478. Dala_Dala_lig_C. 1 hit.
PF01820. Dala_Dala_lig_N. 1 hit.
SUPFAMiSSF52440. SSF52440. 1 hit.
PROSITEiView protein in PROSITE
PS50975. ATP_GRASP. 1 hit.
PS00844. DALA_DALA_LIGASE_2. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiQ6N415_RHOPA
AccessioniPrimary (citable) accession number: Q6N415
Entry historyiIntegrated into UniProtKB/TrEMBL: July 5, 2004
Last sequence update: July 5, 2004
Last modified: May 10, 2017
This is version 104 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.