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Q6N415 (Q6N415_RHOPA) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 75. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Putative D-alanyl-D-alanine ligase A EMBL CAE28966.1
EC=6.3.2.4 EMBL CAE28966.1
Gene names
Name:ddlA EMBL CAE28966.1
Ordered Locus Names:RPA3525 EMBL CAE28966.1
OrganismRhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) [Complete proteome] [HAMAP] EMBL CAE28966.1
Taxonomic identifier258594 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Bradyrhizobiaceae › Rhodopseudomonas ›

Protein attributes

Sequence length329 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Cell wall formation By similarity. SAAS SAAS005905

Catalytic activity

ATP + 2 D-alanine = ADP + phosphate + D-alanyl-D-alanine. SAAS SAAS005905

Cofactor

Binds 2 magnesium or manganese ions per subunit By similarity. SAAS SAAS005905

Pathway

Cell wall biogenesis; peptidoglycan biosynthesis. SAAS SAAS005905

Subcellular location

Cytoplasm By similarity SAAS SAAS005905.

Sequence similarities

Contains 1 ATP-grasp domain. SAAS SAAS005905

Sequences

Sequence LengthMass (Da)Tools
Q6N415 [UniParc].

Last modified July 5, 2004. Version 1.
Checksum: 3C2CAACFC4F65AFF

FASTA32935,057
        10         20         30         40         50         60 
MRHTILFGGT SKERLVSVAS AQALHSALPD ADLWFWNDDD RVHAVSAQAL LAHARPFEEA 

        70         80         90        100        110        120 
FVPDGEDIGP LETALDRAAA EQRLLVLGLH GGVAENGELQ AMCELRRVPF TGSGSAASHL 

       130        140        150        160        170        180 
AFDKVAAKRF AAIAGVRTVT GIALADAEAA LEAHGRLIAK PACDGSSYGL FFINAKQDLV 

       190        200        210        220        230        240 
AVRHAAKTED YLIEPFVAGV EATCGVLEAE DGSLRALPPI EIVPADGGFD YTAKYLAKST 

       250        260        270        280        290        300 
QEICPGRFAP EIASAIMDYA VRAHRVMSCR GYSRSDFIVG KDGPIFLETN TLPGLTKASL 

       310        320 
YPKALNALGI PFVDFLRGQI ALAERAVRS

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References

[1]"Complete genome sequence of the metabolically versatile photosynthetic bacterium Rhodopseudomonas palustris."
Larimer F.W., Chain P., Hauser L., Lamerdin J., Malfatti S., Do L., Land M.L., Pelletier D.A., Beatty T.J., Lang A.S., Tabita F.R., Gibson J.L., Hanson T.E., Torres y Torres J., Peres C., Harrison F.H., Gibson J., Harwood C.S.
Nat. Biotechnol. 22:55-61(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC BAA-98 / CGA009.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		BX572604 Genomic DNA. Translation: CAE28966.1.
RefSeqNP_948863.1. NC_005296.1.

3D structure databases

ProteinModelPortalQ6N415.
ModBaseSearch...

Protein-protein interaction databases

STRING258594.RPA3525.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAE28966; CAE28966; RPA3525.
GeneID2692713.
KEGGrpa:RPA3525.
PATRIC23291571. VBIRhoPal84835_3701.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000011592.
KOK01921.
OMAGELQAMC.
ProtClustDBCLSK911593.

Enzyme and pathway databases

UniPathwayUPA00219.

Family and domain databases

Gene3D3.30.1490.20. 1 hit.
3.30.470.20. 2 hits.
3.40.50.20. 1 hit.
InterProIPR011761. ATP-grasp.
IPR013815. ATP_grasp_subdomain_1.
IPR013816. ATP_grasp_subdomain_2.
IPR000291. D-Ala_lig_Van_CS.
IPR005905. D_ala_D_ala.
IPR011095. Dala_Dala_lig_C.
IPR011127. Dala_Dala_lig_N.
IPR016185. PreATP-grasp_dom.
[Graphical view]
PANTHERPTHR23132. PTHR23132. 1 hit.
PfamPF07478. Dala_Dala_lig_C. 1 hit.
PF01820. Dala_Dala_lig_N. 1 hit.
[Graphical view]
SUPFAMSSF52440. PreATP-grasp-like. 1 hit.
PROSITEPS50975. ATP_GRASP. 1 hit.
PS00844. DALA_DALA_LIGASE_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ6N415_RHOPA
AccessionPrimary (citable) accession number: Q6N415
Entry history
Integrated into UniProtKB/TrEMBL: July 5, 2004
Last sequence update: July 5, 2004
Last modified: May 1, 2013
This is version 75 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info