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Q6N3P9

- GLGB_RHOPA

UniProt

Q6N3P9 - GLGB_RHOPA

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Protein

1,4-alpha-glucan branching enzyme GlgB

Gene

glgB

Organism
Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi

Functioni

Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position.UniRule annotation

Catalytic activityi

Transfers a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain.UniRule annotation

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei399 – 3991NucleophileUniRule annotation
Active sitei452 – 4521Proton donorUniRule annotation

GO - Molecular functioni

  1. 1,4-alpha-glucan branching enzyme activity Source: UniProtKB-HAMAP
  2. cation binding Source: InterPro
  3. hydrolase activity, hydrolyzing O-glycosyl compounds Source: InterPro

GO - Biological processi

  1. glycogen biosynthetic process Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Glycosyltransferase, Transferase

Keywords - Biological processi

Carbohydrate metabolism, Glycogen biosynthesis, Glycogen metabolism

Enzyme and pathway databases

UniPathwayiUPA00164.

Names & Taxonomyi

Protein namesi
Recommended name:
1,4-alpha-glucan branching enzyme GlgBUniRule annotation (EC:2.4.1.18UniRule annotation)
Alternative name(s):
1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferaseUniRule annotation
Alpha-(1->4)-glucan branching enzymeUniRule annotation
Glycogen branching enzymeUniRule annotation
Short name:
BEUniRule annotation
Gene namesi
Name:glgBUniRule annotation
Ordered Locus Names:RPA3644
OrganismiRhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)
Taxonomic identifieri258594 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas
ProteomesiUP000001426: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 7167161,4-alpha-glucan branching enzyme GlgBPRO_0000188738Add
BLAST

Interactioni

Subunit structurei

Monomer.UniRule annotation

Protein-protein interaction databases

STRINGi258594.RPA3644.

Structurei

3D structure databases

ProteinModelPortaliQ6N3P9.
SMRiQ6N3P9. Positions 112-715.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.UniRule annotation

Phylogenomic databases

eggNOGiCOG0296.
HOGENOMiHOG000283037.
KOiK00700.
OMAiISEGRHE.
OrthoDBiEOG6JX7GT.
PhylomeDBiQ6N3P9.

Family and domain databases

Gene3Di2.60.40.10. 2 hits.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPiMF_00685. GlgB.
InterProiIPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view]
PIRSFiPIRSF000463. GlgB. 1 hit.
SUPFAMiSSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 2 hits.
TIGRFAMsiTIGR01515. branching_enzym. 1 hit.

Sequencei

Sequence statusi: Complete.

Q6N3P9-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MTVQLSDEAY AVVEGRHADP FRYLGAHPED GGTMVRVLLP DAVAVEVIGD
60 70 80 90 100
NGDVAPLDQA HPAGLFVGPL PGASPRYTLR ARFGDTTVEL QDPYRFPPIL
110 120 130 140 150
SDFDLYLLGE GTDQRLYDKL GAHPMELEGV AGVGFVVLAP NARRVSVVGD
160 170 180 190 200
FNFWNPLRHQ MRVRGSGYWE LFVPGARAGD HYKFDLAGPN GEQLPQKADP
210 220 230 240 250
LAFAAELRPK TASIVVDATT LPRPRPAPEN INALSAPMSI YEVHLGSWRR
260 270 280 290 300
KEGDQWLTYR ELAEQLPAYV RDMGFTHVEF LPVSEHPFDG SWGYQPTGLY
310 320 330 340 350
APTSRFGSPE DFCALVDACH AAGIGVILDW VPGHFPDDPH GLGNFDGTAL
360 370 380 390 400
YEHANPMQGR HLDWGTLIYN YGRTEVVNFL TANALFWLER YGIDGLRVDA
410 420 430 440 450
VASMLYLDYS RPAGGWIPNK FGGRENIEAI DFIRRFNTEV YGKFPHSTTA
460 470 480 490 500
AEESTAWPQV SRPIEFGGLG FGYKWNMGWM HDTLNYISKD PIHRKYHHGQ
510 520 530 540 550
ILFGLHYAFS ENFILPLSHD EVVHGKRSIL GRMPGDEWQR FANLRAYYAF
560 570 580 590 600
MFGHPGKKLL FMGSEFGQER EWSHDRSLDW HLLEYPKYSG IQALLRDLNK
610 620 630 640 650
LYRSLPALHQ LDCDPFGFEW LITEDANRNL FAWMRKGNDT RARCLVIVNF
660 670 680 690 700
SPNVYQDYRV RVPFPGRWRE VFNSDSAGYG GTNVGNGGEV RTLEGLVPEL
710
SLTIPPLAAI FLTPED
Length:716
Mass (Da):80,566
Last modified:July 5, 2004 - v1
Checksum:i8D82E5F72869E90D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX572604 Genomic DNA. Translation: CAE29085.1.
RefSeqiNP_948982.1. NC_005296.1.

Genome annotation databases

EnsemblBacteriaiCAE29085; CAE29085; RPA3644.
GeneIDi2690661.
KEGGirpa:RPA3644.
PATRICi23291823. VBIRhoPal84835_3827.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX572604 Genomic DNA. Translation: CAE29085.1 .
RefSeqi NP_948982.1. NC_005296.1.

3D structure databases

ProteinModelPortali Q6N3P9.
SMRi Q6N3P9. Positions 112-715.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 258594.RPA3644.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CAE29085 ; CAE29085 ; RPA3644 .
GeneIDi 2690661.
KEGGi rpa:RPA3644.
PATRICi 23291823. VBIRhoPal84835_3827.

Phylogenomic databases

eggNOGi COG0296.
HOGENOMi HOG000283037.
KOi K00700.
OMAi ISEGRHE.
OrthoDBi EOG6JX7GT.
PhylomeDBi Q6N3P9.

Enzyme and pathway databases

UniPathwayi UPA00164 .

Family and domain databases

Gene3Di 2.60.40.10. 2 hits.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPi MF_00685. GlgB.
InterProi IPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view ]
PANTHERi PTHR10357. PTHR10357. 1 hit.
Pfami PF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view ]
PIRSFi PIRSF000463. GlgB. 1 hit.
SUPFAMi SSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 2 hits.
TIGRFAMsi TIGR01515. branching_enzym. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-98 / CGA009.

Entry informationi

Entry nameiGLGB_RHOPA
AccessioniPrimary (citable) accession number: Q6N3P9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 10, 2005
Last sequence update: July 5, 2004
Last modified: November 26, 2014
This is version 78 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Glycosyl hydrolases
    Classification of glycosyl hydrolase families and list of entries
  2. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3