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Protein

1,4-alpha-glucan branching enzyme GlgB

Gene

glgB

Organism
Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position.UniRule annotation

Catalytic activityi

Transfers a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain.UniRule annotation

Pathwayi: glycogen biosynthesis

This protein is involved in the pathway glycogen biosynthesis, which is part of Glycan biosynthesis.UniRule annotation
View all proteins of this organism that are known to be involved in the pathway glycogen biosynthesis and in Glycan biosynthesis.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Active sitei399NucleophileUniRule annotation1
Active sitei452Proton donorUniRule annotation1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionGlycosyltransferase, Transferase
Biological processCarbohydrate metabolism, Glycogen biosynthesis, Glycogen metabolism

Enzyme and pathway databases

BioCyciRPAL258594:G1GT2-3753-MONOMER
UniPathwayiUPA00164

Protein family/group databases

CAZyiCBM48 Carbohydrate-Binding Module Family 48
GH13 Glycoside Hydrolase Family 13

Names & Taxonomyi

Protein namesi
Recommended name:
1,4-alpha-glucan branching enzyme GlgBUniRule annotation (EC:2.4.1.18UniRule annotation)
Alternative name(s):
1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferaseUniRule annotation
Alpha-(1->4)-glucan branching enzymeUniRule annotation
Glycogen branching enzymeUniRule annotation
Short name:
BEUniRule annotation
Gene namesi
Name:glgBUniRule annotation
Ordered Locus Names:RPA3644
OrganismiRhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)
Taxonomic identifieri258594 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas
Proteomesi
  • UP000001426 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001887381 – 7161,4-alpha-glucan branching enzyme GlgBAdd BLAST716

Proteomic databases

PRIDEiQ6N3P9

Interactioni

Subunit structurei

Monomer.UniRule annotation

Protein-protein interaction databases

STRINGi258594.RPA3644

Structurei

3D structure databases

ProteinModelPortaliQ6N3P9
SMRiQ6N3P9
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105C9C Bacteria
COG0296 LUCA
HOGENOMiHOG000283037
KOiK00700
OMAiEVVHGKS
OrthoDBiPOG091H08D1
PhylomeDBiQ6N3P9

Family and domain databases

Gene3Di2.60.40.10, 1 hit
2.60.40.1180, 1 hit
HAMAPiMF_00685 GlgB, 1 hit
InterProiView protein in InterPro
IPR006048 A-amylase/branching_C
IPR037439 Branching_enzy
IPR006407 GlgB
IPR006047 Glyco_hydro_13_cat_dom
IPR004193 Glyco_hydro_13_N
IPR013780 Glyco_hydro_b
IPR017853 Glycoside_hydrolase_SF
IPR013783 Ig-like_fold
IPR014756 Ig_E-set
PANTHERiPTHR43651 PTHR43651, 2 hits
PfamiView protein in Pfam
PF00128 Alpha-amylase, 1 hit
PF02806 Alpha-amylase_C, 1 hit
PF02922 CBM_48, 1 hit
PIRSFiPIRSF000463 GlgB, 1 hit
SMARTiView protein in SMART
SM00642 Aamy, 1 hit
SUPFAMiSSF51445 SSF51445, 1 hit
SSF81296 SSF81296, 2 hits
TIGRFAMsiTIGR01515 branching_enzym, 1 hit

Sequencei

Sequence statusi: Complete.

Q6N3P9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTVQLSDEAY AVVEGRHADP FRYLGAHPED GGTMVRVLLP DAVAVEVIGD
60 70 80 90 100
NGDVAPLDQA HPAGLFVGPL PGASPRYTLR ARFGDTTVEL QDPYRFPPIL
110 120 130 140 150
SDFDLYLLGE GTDQRLYDKL GAHPMELEGV AGVGFVVLAP NARRVSVVGD
160 170 180 190 200
FNFWNPLRHQ MRVRGSGYWE LFVPGARAGD HYKFDLAGPN GEQLPQKADP
210 220 230 240 250
LAFAAELRPK TASIVVDATT LPRPRPAPEN INALSAPMSI YEVHLGSWRR
260 270 280 290 300
KEGDQWLTYR ELAEQLPAYV RDMGFTHVEF LPVSEHPFDG SWGYQPTGLY
310 320 330 340 350
APTSRFGSPE DFCALVDACH AAGIGVILDW VPGHFPDDPH GLGNFDGTAL
360 370 380 390 400
YEHANPMQGR HLDWGTLIYN YGRTEVVNFL TANALFWLER YGIDGLRVDA
410 420 430 440 450
VASMLYLDYS RPAGGWIPNK FGGRENIEAI DFIRRFNTEV YGKFPHSTTA
460 470 480 490 500
AEESTAWPQV SRPIEFGGLG FGYKWNMGWM HDTLNYISKD PIHRKYHHGQ
510 520 530 540 550
ILFGLHYAFS ENFILPLSHD EVVHGKRSIL GRMPGDEWQR FANLRAYYAF
560 570 580 590 600
MFGHPGKKLL FMGSEFGQER EWSHDRSLDW HLLEYPKYSG IQALLRDLNK
610 620 630 640 650
LYRSLPALHQ LDCDPFGFEW LITEDANRNL FAWMRKGNDT RARCLVIVNF
660 670 680 690 700
SPNVYQDYRV RVPFPGRWRE VFNSDSAGYG GTNVGNGGEV RTLEGLVPEL
710
SLTIPPLAAI FLTPED
Length:716
Mass (Da):80,566
Last modified:July 5, 2004 - v1
Checksum:i8D82E5F72869E90D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX572604 Genomic DNA Translation: CAE29085.1
RefSeqiWP_011159183.1, NC_005296.1

Genome annotation databases

EnsemblBacteriaiCAE29085; CAE29085; RPA3644
KEGGirpa:RPA3644

Similar proteinsi

Entry informationi

Entry nameiGLGB_RHOPA
AccessioniPrimary (citable) accession number: Q6N3P9
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 10, 2005
Last sequence update: July 5, 2004
Last modified: May 23, 2018
This is version 96 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Glycosyl hydrolases
    Classification of glycosyl hydrolase families and list of entries
  2. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  3. SIMILARITY comments
    Index of protein domains and families

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