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Q6N3P3

- Q6N3P3_RHOPA

UniProt

Q6N3P3 - Q6N3P3_RHOPA

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Protein
Submitted name: ATP-dependent DNA ligase
Gene
RPA3650
Organism
Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported (EC:6.5.1.1Imported)
Gene namesi
Ordered Locus Names:RPA3650Imported
OrganismiRhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)Imported
Taxonomic identifieri258594 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas
ProteomesiUP000001426: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi258594.RPA3650.

Structurei

3D structure databases

ProteinModelPortaliQ6N3P3.

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiNGLPDFQ.
OrthoDBiEOG661H49.
PhylomeDBiQ6N3P3.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q6N3P3-1 [UniParc]FASTAAdd to Basket

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MASNKLSIYR KKRDFEQTAE PRGDAKVAPS KQRRFVIQKH DATRLHYDLR    50
LEYGGVFKSW AVTKGPSLDP NDKRLAVEVE DHPLDYGDFE GTIPKGQYGG 100
GTVQLWDRGY WECDDPERGF KTGDLKFTLH GEKLHGSWVL VRMRHDRSGG 150
KRTNWLLIKH RDDDAREGDA NTVLDEDRSV ASGRAMDTIA EGKGKAPKPF 200
MLRKAATRVT ADAVWDSNTG LAADKRAETG AAKKVAKSKP TTSAKAKAAK 250
SAKPASRSKP AAQGKRAAMP DFVPPQLCTS VERPPGGEGW GHEIKFDGYR 300
MQLRVEHGEA RLLTRKGLDW TAKFGAIADE AASLPDAIID TEVVALDSHG 350
QPDFASLQAA LSDGHTENLI CFAFDLLYVD GEDLRGLPLA ERKARLAALL 400
KAARGRRKEG LIRYVEHFDT GGDAILQSAC KLSLEGIVSK KLDAAYRSGR 450
SDGWTKAKCR AGHEVVIGGW KTTNGKFRSL LVGVHRGDDL AYVGIVGTGF 500
GQDVVKRILP ELKAHKADTS PFSGANAPKK TREVHWVTPD LVAEIEFAGF 550
TGAGMVRQAS FKGLRADKPA EEVEAEEPQR VELAEPAPMR RIAKASKSGK 600
PAAKRAAPRR ADAARSEVMG VAISKPDKEL WPASEIGAAI TKRDLADYFA 650
EVGDWLIPHI KGRPCSILRA PDGIDGEHFF QRHAMPGMSN LIGLAKVSGD 700
RKPYVQIDRV EGLIAAAQIG GVELHPWNCA PNRYDVPGRL VFDLDPAPEV 750
GFDEVITAAK EMKQRLEALG LKTFCKTTGG KGLHVVVPLK PDDGIDWKAA 800
KTFAQTVCAQ MAEDSPEQYL LNMSKRKRIG KIFLDYLRND RMSTAVAVLS 850
PRARTGATVS MPLTWSQVKA GLDPKRYTIE SVPALIKRSK AWTDYDDAAT 900
PLKAAIRTLT SGKT 914
Length:914
Mass (Da):99,962
Last modified:July 5, 2004 - v1
Checksum:iBC40ABEC6A8BD78A
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BX572604 Genomic DNA. Translation: CAE29091.1.
RefSeqiNP_948988.1. NC_005296.1.
WP_011159189.1. NC_005296.1.

Genome annotation databases

EnsemblBacteriaiCAE29091; CAE29091; RPA3650.
GeneIDi2692806.
KEGGirpa:RPA3650.
PATRICi23291835. VBIRhoPal84835_3833.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BX572604 Genomic DNA. Translation: CAE29091.1 .
RefSeqi NP_948988.1. NC_005296.1.
WP_011159189.1. NC_005296.1.

3D structure databases

ProteinModelPortali Q6N3P3.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 258594.RPA3650.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CAE29091 ; CAE29091 ; RPA3650 .
GeneIDi 2692806.
KEGGi rpa:RPA3650.
PATRICi 23291835. VBIRhoPal84835_3833.

Phylogenomic databases

HOGENOMi HOG000222509.
KOi K01971.
OMAi NGLPDFQ.
OrthoDBi EOG661H49.
PhylomeDBi Q6N3P3.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-98 / CGA009.

Entry informationi

Entry nameiQ6N3P3_RHOPA
AccessioniPrimary (citable) accession number: Q6N3P3
Entry historyi
Integrated into UniProtKB/TrEMBL: July 5, 2004
Last sequence update: July 5, 2004
Last modified: September 3, 2014
This is version 65 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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