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Q6N3P3 (Q6N3P3_RHOPA) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 57. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
ATP-dependent DNA ligase EMBL CAE29091.1
EC=6.5.1.1 EMBL CAE29091.1
Gene names
Ordered Locus Names:RPA3650 EMBL CAE29091.1
OrganismRhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) [Complete proteome] [HAMAP] EMBL CAE29091.1
Taxonomic identifier258594 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Bradyrhizobiaceae › Rhodopseudomonas ›

Protein attributes

Sequence length914 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL CAE29091.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q6N3P3 [UniParc].

Last modified July 5, 2004. Version 1.
Checksum: BC40ABEC6A8BD78A

FASTA91499,962
        10         20         30         40         50         60 
MASNKLSIYR KKRDFEQTAE PRGDAKVAPS KQRRFVIQKH DATRLHYDLR LEYGGVFKSW 

        70         80         90        100        110        120 
AVTKGPSLDP NDKRLAVEVE DHPLDYGDFE GTIPKGQYGG GTVQLWDRGY WECDDPERGF 

       130        140        150        160        170        180 
KTGDLKFTLH GEKLHGSWVL VRMRHDRSGG KRTNWLLIKH RDDDAREGDA NTVLDEDRSV 

       190        200        210        220        230        240 
ASGRAMDTIA EGKGKAPKPF MLRKAATRVT ADAVWDSNTG LAADKRAETG AAKKVAKSKP 

       250        260        270        280        290        300 
TTSAKAKAAK SAKPASRSKP AAQGKRAAMP DFVPPQLCTS VERPPGGEGW GHEIKFDGYR 

       310        320        330        340        350        360 
MQLRVEHGEA RLLTRKGLDW TAKFGAIADE AASLPDAIID TEVVALDSHG QPDFASLQAA 

       370        380        390        400        410        420 
LSDGHTENLI CFAFDLLYVD GEDLRGLPLA ERKARLAALL KAARGRRKEG LIRYVEHFDT 

       430        440        450        460        470        480 
GGDAILQSAC KLSLEGIVSK KLDAAYRSGR SDGWTKAKCR AGHEVVIGGW KTTNGKFRSL 

       490        500        510        520        530        540 
LVGVHRGDDL AYVGIVGTGF GQDVVKRILP ELKAHKADTS PFSGANAPKK TREVHWVTPD 

       550        560        570        580        590        600 
LVAEIEFAGF TGAGMVRQAS FKGLRADKPA EEVEAEEPQR VELAEPAPMR RIAKASKSGK 

       610        620        630        640        650        660 
PAAKRAAPRR ADAARSEVMG VAISKPDKEL WPASEIGAAI TKRDLADYFA EVGDWLIPHI 

       670        680        690        700        710        720 
KGRPCSILRA PDGIDGEHFF QRHAMPGMSN LIGLAKVSGD RKPYVQIDRV EGLIAAAQIG 

       730        740        750        760        770        780 
GVELHPWNCA PNRYDVPGRL VFDLDPAPEV GFDEVITAAK EMKQRLEALG LKTFCKTTGG 

       790        800        810        820        830        840 
KGLHVVVPLK PDDGIDWKAA KTFAQTVCAQ MAEDSPEQYL LNMSKRKRIG KIFLDYLRND 

       850        860        870        880        890        900 
RMSTAVAVLS PRARTGATVS MPLTWSQVKA GLDPKRYTIE SVPALIKRSK AWTDYDDAAT 

       910 
PLKAAIRTLT SGKT

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References

[1]"Complete genome sequence of the metabolically versatile photosynthetic bacterium Rhodopseudomonas palustris."
Larimer F.W., Chain P., Hauser L., Lamerdin J., Malfatti S., Do L., Land M.L., Pelletier D.A., Beatty T.J., Lang A.S., Tabita F.R., Gibson J.L., Hanson T.E., Torres y Torres J., Peres C., Harrison F.H., Gibson J., Harwood C.S.
Nat. Biotechnol. 22:55-61(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC BAA-98 / CGA009.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		BX572604 Genomic DNA. Translation: CAE29091.1.
RefSeqNP_948988.1. NC_005296.1.

3D structure databases

ProteinModelPortalQ6N3P3.
ModBaseSearch...

Protein-protein interaction databases

STRING258594.RPA3650.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAE29091; CAE29091; RPA3650.
GeneID2692806.
KEGGrpa:RPA3650.
PATRIC23291835. VBIRhoPal84835_3833.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000222509.
KOK01971.
OMALVAECEF.
ProtClustDBPRK05972.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ6N3P3_RHOPA
AccessionPrimary (citable) accession number: Q6N3P3
Entry history
Integrated into UniProtKB/TrEMBL: July 5, 2004
Last sequence update: July 5, 2004
Last modified: May 1, 2013
This is version 57 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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