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Q6N3P3

- Q6N3P3_RHOPA

UniProt

Q6N3P3 - Q6N3P3_RHOPA

Protein
Submitted name:

ATP-dependent DNA ligase

Gene

RPA3650

Organism
Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 66 (01 Oct 2014)
      Sequence version 1 (05 Jul 2004)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligaseImported (EC:6.5.1.1Imported)
    Gene namesi
    Ordered Locus Names:RPA3650Imported
    OrganismiRhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)Imported
    Taxonomic identifieri258594 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas
    ProteomesiUP000001426: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi258594.RPA3650.

    Structurei

    3D structure databases

    ProteinModelPortaliQ6N3P3.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiNGLPDFQ.
    OrthoDBiEOG661H49.
    PhylomeDBiQ6N3P3.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q6N3P3-1 [UniParc]FASTAAdd to Basket

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    MASNKLSIYR KKRDFEQTAE PRGDAKVAPS KQRRFVIQKH DATRLHYDLR    50
    LEYGGVFKSW AVTKGPSLDP NDKRLAVEVE DHPLDYGDFE GTIPKGQYGG 100
    GTVQLWDRGY WECDDPERGF KTGDLKFTLH GEKLHGSWVL VRMRHDRSGG 150
    KRTNWLLIKH RDDDAREGDA NTVLDEDRSV ASGRAMDTIA EGKGKAPKPF 200
    MLRKAATRVT ADAVWDSNTG LAADKRAETG AAKKVAKSKP TTSAKAKAAK 250
    SAKPASRSKP AAQGKRAAMP DFVPPQLCTS VERPPGGEGW GHEIKFDGYR 300
    MQLRVEHGEA RLLTRKGLDW TAKFGAIADE AASLPDAIID TEVVALDSHG 350
    QPDFASLQAA LSDGHTENLI CFAFDLLYVD GEDLRGLPLA ERKARLAALL 400
    KAARGRRKEG LIRYVEHFDT GGDAILQSAC KLSLEGIVSK KLDAAYRSGR 450
    SDGWTKAKCR AGHEVVIGGW KTTNGKFRSL LVGVHRGDDL AYVGIVGTGF 500
    GQDVVKRILP ELKAHKADTS PFSGANAPKK TREVHWVTPD LVAEIEFAGF 550
    TGAGMVRQAS FKGLRADKPA EEVEAEEPQR VELAEPAPMR RIAKASKSGK 600
    PAAKRAAPRR ADAARSEVMG VAISKPDKEL WPASEIGAAI TKRDLADYFA 650
    EVGDWLIPHI KGRPCSILRA PDGIDGEHFF QRHAMPGMSN LIGLAKVSGD 700
    RKPYVQIDRV EGLIAAAQIG GVELHPWNCA PNRYDVPGRL VFDLDPAPEV 750
    GFDEVITAAK EMKQRLEALG LKTFCKTTGG KGLHVVVPLK PDDGIDWKAA 800
    KTFAQTVCAQ MAEDSPEQYL LNMSKRKRIG KIFLDYLRND RMSTAVAVLS 850
    PRARTGATVS MPLTWSQVKA GLDPKRYTIE SVPALIKRSK AWTDYDDAAT 900
    PLKAAIRTLT SGKT 914
    Length:914
    Mass (Da):99,962
    Last modified:July 5, 2004 - v1
    Checksum:iBC40ABEC6A8BD78A
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BX572604 Genomic DNA. Translation: CAE29091.1.
    RefSeqiNP_948988.1. NC_005296.1.
    WP_011159189.1. NC_005296.1.

    Genome annotation databases

    EnsemblBacteriaiCAE29091; CAE29091; RPA3650.
    GeneIDi2692806.
    KEGGirpa:RPA3650.
    PATRICi23291835. VBIRhoPal84835_3833.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BX572604 Genomic DNA. Translation: CAE29091.1 .
    RefSeqi NP_948988.1. NC_005296.1.
    WP_011159189.1. NC_005296.1.

    3D structure databases

    ProteinModelPortali Q6N3P3.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 258594.RPA3650.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai CAE29091 ; CAE29091 ; RPA3650 .
    GeneIDi 2692806.
    KEGGi rpa:RPA3650.
    PATRICi 23291835. VBIRhoPal84835_3833.

    Phylogenomic databases

    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi NGLPDFQ.
    OrthoDBi EOG661H49.
    PhylomeDBi Q6N3P3.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC BAA-98 / CGA009Imported.

    Entry informationi

    Entry nameiQ6N3P3_RHOPA
    AccessioniPrimary (citable) accession number: Q6N3P3
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 5, 2004
    Last sequence update: July 5, 2004
    Last modified: October 1, 2014
    This is version 66 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3