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Q6N3P3

- Q6N3P3_RHOPA

UniProt

Q6N3P3 - Q6N3P3_RHOPA

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Protein
Submitted name:

ATP-dependent DNA ligase

Gene

RPA3650

Organism
Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported (EC:6.5.1.1Imported)
Gene namesi
Ordered Locus Names:RPA3650Imported
OrganismiRhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)Imported
Taxonomic identifieri258594 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas
ProteomesiUP000001426: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi258594.RPA3650.

Structurei

3D structure databases

ProteinModelPortaliQ6N3P3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiNGLPDFQ.
OrthoDBiEOG661H49.
PhylomeDBiQ6N3P3.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q6N3P3 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MASNKLSIYR KKRDFEQTAE PRGDAKVAPS KQRRFVIQKH DATRLHYDLR
60 70 80 90 100
LEYGGVFKSW AVTKGPSLDP NDKRLAVEVE DHPLDYGDFE GTIPKGQYGG
110 120 130 140 150
GTVQLWDRGY WECDDPERGF KTGDLKFTLH GEKLHGSWVL VRMRHDRSGG
160 170 180 190 200
KRTNWLLIKH RDDDAREGDA NTVLDEDRSV ASGRAMDTIA EGKGKAPKPF
210 220 230 240 250
MLRKAATRVT ADAVWDSNTG LAADKRAETG AAKKVAKSKP TTSAKAKAAK
260 270 280 290 300
SAKPASRSKP AAQGKRAAMP DFVPPQLCTS VERPPGGEGW GHEIKFDGYR
310 320 330 340 350
MQLRVEHGEA RLLTRKGLDW TAKFGAIADE AASLPDAIID TEVVALDSHG
360 370 380 390 400
QPDFASLQAA LSDGHTENLI CFAFDLLYVD GEDLRGLPLA ERKARLAALL
410 420 430 440 450
KAARGRRKEG LIRYVEHFDT GGDAILQSAC KLSLEGIVSK KLDAAYRSGR
460 470 480 490 500
SDGWTKAKCR AGHEVVIGGW KTTNGKFRSL LVGVHRGDDL AYVGIVGTGF
510 520 530 540 550
GQDVVKRILP ELKAHKADTS PFSGANAPKK TREVHWVTPD LVAEIEFAGF
560 570 580 590 600
TGAGMVRQAS FKGLRADKPA EEVEAEEPQR VELAEPAPMR RIAKASKSGK
610 620 630 640 650
PAAKRAAPRR ADAARSEVMG VAISKPDKEL WPASEIGAAI TKRDLADYFA
660 670 680 690 700
EVGDWLIPHI KGRPCSILRA PDGIDGEHFF QRHAMPGMSN LIGLAKVSGD
710 720 730 740 750
RKPYVQIDRV EGLIAAAQIG GVELHPWNCA PNRYDVPGRL VFDLDPAPEV
760 770 780 790 800
GFDEVITAAK EMKQRLEALG LKTFCKTTGG KGLHVVVPLK PDDGIDWKAA
810 820 830 840 850
KTFAQTVCAQ MAEDSPEQYL LNMSKRKRIG KIFLDYLRND RMSTAVAVLS
860 870 880 890 900
PRARTGATVS MPLTWSQVKA GLDPKRYTIE SVPALIKRSK AWTDYDDAAT
910
PLKAAIRTLT SGKT
Length:914
Mass (Da):99,962
Last modified:July 5, 2004 - v1
Checksum:iBC40ABEC6A8BD78A
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BX572604 Genomic DNA. Translation: CAE29091.1.
RefSeqiNP_948988.1. NC_005296.1.
WP_011159189.1. NC_005296.1.

Genome annotation databases

EnsemblBacteriaiCAE29091; CAE29091; RPA3650.
GeneIDi2692806.
KEGGirpa:RPA3650.
PATRICi23291835. VBIRhoPal84835_3833.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BX572604 Genomic DNA. Translation: CAE29091.1 .
RefSeqi NP_948988.1. NC_005296.1.
WP_011159189.1. NC_005296.1.

3D structure databases

ProteinModelPortali Q6N3P3.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 258594.RPA3650.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CAE29091 ; CAE29091 ; RPA3650 .
GeneIDi 2692806.
KEGGi rpa:RPA3650.
PATRICi 23291835. VBIRhoPal84835_3833.

Phylogenomic databases

HOGENOMi HOG000222509.
KOi K01971.
OMAi NGLPDFQ.
OrthoDBi EOG661H49.
PhylomeDBi Q6N3P3.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-98 / CGA009Imported.

Entry informationi

Entry nameiQ6N3P3_RHOPA
AccessioniPrimary (citable) accession number: Q6N3P3
Entry historyi
Integrated into UniProtKB/TrEMBL: July 5, 2004
Last sequence update: July 5, 2004
Last modified: October 1, 2014
This is version 66 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3