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Q6N2A3

- TYPH_RHOPA

UniProt

Q6N2A3 - TYPH_RHOPA

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Protein

Putative thymidine phosphorylase

Gene

RPA4147

Organism
Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Catalytic activityi

Thymidine + phosphate = thymine + 2-deoxy-alpha-D-ribose 1-phosphate.UniRule annotation

GO - Molecular functioni

  1. phosphorylase activity Source: InterPro
  2. thymidine phosphorylase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. pyrimidine nucleobase metabolic process Source: InterPro
  2. pyrimidine nucleoside metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Glycosyltransferase, Transferase

Names & Taxonomyi

Protein namesi
Recommended name:
Putative thymidine phosphorylaseUniRule annotation (EC:2.4.2.4UniRule annotation)
Alternative name(s):
TdRPaseUniRule annotation
Gene namesi
Ordered Locus Names:RPA4147
OrganismiRhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)
Taxonomic identifieri258594 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas
ProteomesiUP000001426: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 514514Putative thymidine phosphorylasePRO_0000314713Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi258594.RPA4147.

Structurei

3D structure databases

ProteinModelPortaliQ6N2A3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the thymidine/pyrimidine-nucleoside phosphorylase family. Type 2 subfamily.UniRule annotation

Phylogenomic databases

eggNOGiCOG0213.
HOGENOMiHOG000252767.
KOiK00758.
OrthoDBiEOG61ZTGG.

Family and domain databases

Gene3Di3.40.1030.10. 1 hit.
3.90.1170.30. 1 hit.
HAMAPiMF_00703. Thymid_phosp_2.
InterProiIPR000312. Glycosyl_Trfase_fam3.
IPR017459. Glycosyl_Trfase_fam3_N_dom.
IPR013102. PYNP_C.
IPR000053. Pyrmidine_PPase.
IPR017872. Pyrmidine_PPase_CS.
IPR028579. Thym_Pase_Put.
IPR013466. Thymidine/AMP_Pase.
[Graphical view]
PANTHERiPTHR10515. PTHR10515. 1 hit.
PfamiPF02885. Glycos_trans_3N. 1 hit.
PF00591. Glycos_transf_3. 1 hit.
PF07831. PYNP_C. 1 hit.
[Graphical view]
PIRSFiPIRSF000478. TP_PyNP. 1 hit.
SMARTiSM00941. PYNP_C. 1 hit.
[Graphical view]
SUPFAMiSSF47648. SSF47648. 1 hit.
SSF52418. SSF52418. 1 hit.
SSF54680. SSF54680. 1 hit.
TIGRFAMsiTIGR02645. ARCH_P_rylase. 1 hit.
PROSITEiPS00647. THYMID_PHOSPHORYLASE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q6N2A3-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MNAPDLTRPP LTIRRISLDT GRENVAVISR RSRALRPEVF RGFSRVELRI
60 70 80 90 100
NSKVLLATLM ITDDDAMIGP DEVGLSEPAF RRFNEPVGSA VSVTPARSPA
110 120 130 140 150
SLDAVRAKIQ GHTLSAAEIT AIVDDLAHFR YSDMEIAAFL ISAARFTTTD
160 170 180 190 200
ELLALVGAMA SVGTKLTWDT PIVVDKHCIG GIPGNRTTMI VVPIVAAHGL
210 220 230 240 250
MIPKTSSRAI TSPAGTADTM ELLARVDLDV EQMKQVVHAC GGCLVWGGHV
260 270 280 290 300
NLSPADDILI SVERPLSLDT PEQMVASIMS KKLAAGSTRL LIDFPVGPSA
310 320 330 340 350
KVTNANEAMR LRKLFEFVGD HFGISVEVVT TDGRQPIGRG IGPVLEARDV
360 370 380 390 400
MAVLGNEPGA PADLREKSLR LAAHLLEYDP KLRGGTGYAR AKELLDSGAA
410 420 430 440 450
LKKMQQIIDA QGPSPCPAEL GSYAADVLAA ADGVVNGIDC LRINRLARSA
460 470 480 490 500
GAPVAKGAGI DLFKKIGDRV EKGEPLYRVY ASDRSEFDLA LAAAQAESGF
510
AINHHTPADV DLVS
Length:514
Mass (Da):54,680
Last modified:January 15, 2008 - v2
Checksum:iA2FD6F004F8FFE9C
GO

Sequence cautioni

The sequence CAE29588.1 differs from that shown. Reason: Erroneous initiation.

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BX572606 Genomic DNA. Translation: CAE29588.1. Different initiation.
RefSeqiNP_949483.1. NC_005296.1.
WP_011159682.1. NC_005296.1.

Genome annotation databases

EnsemblBacteriaiCAE29588; CAE29588; RPA4147.
GeneIDi2690431.
KEGGirpa:RPA4147.
PATRICi23292875. VBIRhoPal84835_4351.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BX572606 Genomic DNA. Translation: CAE29588.1 . Different initiation.
RefSeqi NP_949483.1. NC_005296.1.
WP_011159682.1. NC_005296.1.

3D structure databases

ProteinModelPortali Q6N2A3.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 258594.RPA4147.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CAE29588 ; CAE29588 ; RPA4147 .
GeneIDi 2690431.
KEGGi rpa:RPA4147.
PATRICi 23292875. VBIRhoPal84835_4351.

Phylogenomic databases

eggNOGi COG0213.
HOGENOMi HOG000252767.
KOi K00758.
OrthoDBi EOG61ZTGG.

Family and domain databases

Gene3Di 3.40.1030.10. 1 hit.
3.90.1170.30. 1 hit.
HAMAPi MF_00703. Thymid_phosp_2.
InterProi IPR000312. Glycosyl_Trfase_fam3.
IPR017459. Glycosyl_Trfase_fam3_N_dom.
IPR013102. PYNP_C.
IPR000053. Pyrmidine_PPase.
IPR017872. Pyrmidine_PPase_CS.
IPR028579. Thym_Pase_Put.
IPR013466. Thymidine/AMP_Pase.
[Graphical view ]
PANTHERi PTHR10515. PTHR10515. 1 hit.
Pfami PF02885. Glycos_trans_3N. 1 hit.
PF00591. Glycos_transf_3. 1 hit.
PF07831. PYNP_C. 1 hit.
[Graphical view ]
PIRSFi PIRSF000478. TP_PyNP. 1 hit.
SMARTi SM00941. PYNP_C. 1 hit.
[Graphical view ]
SUPFAMi SSF47648. SSF47648. 1 hit.
SSF52418. SSF52418. 1 hit.
SSF54680. SSF54680. 1 hit.
TIGRFAMsi TIGR02645. ARCH_P_rylase. 1 hit.
PROSITEi PS00647. THYMID_PHOSPHORYLASE. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-98 / CGA009.

Entry informationi

Entry nameiTYPH_RHOPA
AccessioniPrimary (citable) accession number: Q6N2A3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: January 15, 2008
Last modified: October 1, 2014
This is version 64 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3