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Protein

Beta-(1-->2)glucan export ATP-binding/permease protein NdvA

Gene

ndvA

Organism
Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Involved in beta-(1-->2)glucan export. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation (By similarity).By similarity

Catalytic activityi

ATP + H2O + beta-glucan(In) = ADP + phosphate + beta-glucan(Out).UniRule annotation

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi378 – 385ATPUniRule annotation8

GO - Molecular functioni

Keywordsi

Molecular functionHydrolase
Biological processSugar transport, Transport
LigandATP-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Beta-(1-->2)glucan export ATP-binding/permease protein NdvAUniRule annotation (EC:3.6.3.42UniRule annotation)
Gene namesi
Name:ndvAUniRule annotation
Ordered Locus Names:RPA4265
OrganismiRhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)
Taxonomic identifieri258594 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas
Proteomesi
  • UP000001426 Componenti: Chromosome

Subcellular locationi

Q6N1Y7:
  • Cell inner membrane UniRule annotation; Multi-pass membrane protein UniRule annotation

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei22 – 42HelicalUniRule annotationAdd BLAST21
Transmembranei68 – 88HelicalUniRule annotationAdd BLAST21
Transmembranei146 – 166HelicalUniRule annotationAdd BLAST21
Transmembranei168 – 188HelicalUniRule annotationAdd BLAST21
Transmembranei254 – 274HelicalUniRule annotationAdd BLAST21
Transmembranei276 – 296HelicalUniRule annotationAdd BLAST21

GO - Cellular componenti

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_50000977741 – 599Beta-(1-->2)glucan export ATP-binding/permease protein NdvAAdd BLAST599

Interactioni

Subunit structurei

Homodimer.UniRule annotation

Protein-protein interaction databases

STRINGi258594.RPA4265.

Structurei

3D structure databases

ProteinModelPortaliQ6N1Y7.
SMRiQ6N1Y7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini21 – 311ABC transmembrane type-1UniRule annotationAdd BLAST291
Domaini345 – 579ABC transporterUniRule annotationAdd BLAST235

Domaini

In NdvA the ATP-binding domain (NBD) and the transmembrane domain (TMD) are fused.

Sequence similaritiesi

Belongs to the ABC transporter superfamily. Beta-(1-->2)glucan exporter (TC 3.A.1.108.1) family. [View classification]UniRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105BZ1. Bacteria.
COG1132. LUCA.
KOiK06147.
OMAiMPVLSWW.
OrthoDBiPOG091H00DB.
PhylomeDBiQ6N1Y7.

Family and domain databases

Gene3Di1.20.1560.10. 1 hit.
InterProiView protein in InterPro
IPR003593. AAA+_ATPase.
IPR011527. ABC1_TM_dom.
IPR036640. ABC1_TM_sf.
IPR017902. ABC_bGlucan_ATPase.
IPR003439. ABC_transporter-like.
IPR017871. ABC_transporter_CS.
IPR027417. P-loop_NTPase.
PfamiView protein in Pfam
PF00664. ABC_membrane. 1 hit.
PF00005. ABC_tran. 1 hit.
SMARTiView protein in SMART
SM00382. AAA. 1 hit.
SUPFAMiSSF52540. SSF52540. 1 hit.
SSF90123. SSF90123. 2 hits.
PROSITEiView protein in PROSITE
PS50929. ABC_TM1F. 1 hit.
PS00211. ABC_TRANSPORTER_1. 1 hit.
PS50893. ABC_TRANSPORTER_2. 1 hit.
PS51317. NDVA. 1 hit.

Sequencei

Sequence statusi: Complete.

Q6N1Y7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSLFHLYTRV LQLLGKEARL GWILAVANLL LATAQFAEPI LFGRIVDVMS
60 70 80 90 100
GNLATGALVP ETRSPWPLLG AWVGFGLFTI MCSALVALQA DRLAHRRRQA
110 120 130 140 150
VLTSYFEHIL QLPISFHTGT HSGRLMKVML QGTDALWRMW LGFFREHFAA
160 170 180 190 200
ILSLVVLLPL SLYINWRLAI LLFVLCIVFT VLTTLVVHKT YGMQGEVEAQ
210 220 230 240 250
YSDLSARASD ALGNVALVQS FVRVDAEVQG LRNVSGRLLE AQMPVLSWWA
260 270 280 290 300
LVTVITRAST TITVLSIFAL GIYLNQQGLT SVGEIVMFVS FATLLIQRLE
310 320 330 340 350
QVVNFINNVL MEAPRLREFI AVLDTVPAVR DRADAIDCGR LSGLVEFQNV
360 370 380 390 400
SFSYDGKRPA IEDLSFTALP GDTIALVGAT GAGKSTAIAL LHRAFDPQSG
410 420 430 440 450
VIKVDGMDIR GITLASLRRN IGVVFQEALL FDRSIADNLR VGKPDATPEE
460 470 480 490 500
LRLAAERAQA LEFIERSDHK FDTNAGERGR MLSGGERQRL SIARALLKDP
510 520 530 540 550
PILILDEATS ALDAVTEAKL NLALDEVMKG RTTFVIAHRL STIRDATRIL
560 570 580 590
VFDNGKVIES GTFDELVARG GAFAQLARAQ FMVQESARSA MSSAADAQL
Length:599
Mass (Da):65,673
Last modified:July 5, 2004 - v1
Checksum:i67ACD9400D2F3CD7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX572606 Genomic DNA. Translation: CAE29706.1.
RefSeqiWP_011159800.1. NC_005296.1.

Genome annotation databases

EnsemblBacteriaiCAE29706; CAE29706; RPA4265.
KEGGirpa:RPA4265.

Similar proteinsi

Entry informationi

Entry nameiNDVA_RHOPA
AccessioniPrimary (citable) accession number: Q6N1Y7
Entry historyiIntegrated into UniProtKB/Swiss-Prot: June 12, 2007
Last sequence update: July 5, 2004
Last modified: October 25, 2017
This is version 106 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families