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Protein

Alpha-amylase

Gene

amy

Organism
Bdellovibrio bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIB 9529 / HD100)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseUniRule annotationImported, Hydrolase

Keywords - Biological processi

Carbohydrate metabolismUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Alpha-amylaseUniRule annotationImported (EC:3.2.1.1UniRule annotationImported)
Gene namesi
Name:amyImported
Ordered Locus Names:Bd1224Imported
OrganismiBdellovibrio bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIB 9529 / HD100)Imported
Taxonomic identifieri264462 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaBdellovibrionalesBdellovibrionaceaeBdellovibrio
ProteomesiUP000008080 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi264462.Bd1224.

Structurei

3D structure databases

ProteinModelPortaliQ6MNM3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyl hydrolase 13 family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000253313.
KOiK01176.
OMAiVAINHES.
OrthoDBiEOG6RZB1B.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR006048. A-amylase_b_C.
IPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
[Graphical view]
PRINTSiPR00110. ALPHAAMYLASE.
SMARTiSM00642. Aamy. 1 hit.
SM00632. Aamy_C. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q6MNM3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIRSLSLGFT AFLLTLASCL SAAAAPRTVF VQLFEWPWND VARECETYLG
60 70 80 90 100
PAGFSAVQVS PPHEHIHWQG NPWWERYQVV SYKLESRSGT EAEFADMVRR
110 120 130 140 150
CRQAGVDVYA DAILNHMTGI PGGVGSAGTQ FSHYEYPGLY SPQDFHHCGR
160 170 180 190 200
NGNNDIRDFR DLYELQNCEL VDLADLKTES TYVQEKQAEY LNRLLDLGVA
210 220 230 240 250
GFRIDAAKHI PARDLDQILK RLKRSAYIYS EIIYDPAGPV QYAEYTPFSD
260 270 280 290 300
VTAYDYPHRL GYAFKDKNTE ALQFIASGFP NSIDSIVFVT NHDIERTNDY
310 320 330 340 350
SVLKYSSPEQ HLYRLAQIFM LAWPFGYPQV YSGFDFNSFD QGPPLNDNLR
360 370 380 390 400
TLPILDEQNQ CRAPWTCEHR LPEVAAMVDF RNQTDKAFSV SNWSTHGRDV
410 420 430 440 450
ISFARPRFGF VAMNFGGQSV TKEFQTNLPA GEYCNIVDSG YRLKSRSCAK
460 470 480
GFSVNNSGKV RATLAPYSSL VLLVKAQVKK
Length:480
Mass (Da):54,343
Last modified:July 5, 2004 - v1
Checksum:iCC8F1C3009BECCAA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX842649 Genomic DNA. Translation: CAE79128.1.
RefSeqiWP_011163730.1. NC_005363.1.

Genome annotation databases

EnsemblBacteriaiCAE79128; CAE79128; Bd1224.
KEGGibba:Bd1224.
PATRICi21077054. VBIBdeBac73187_1107.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX842649 Genomic DNA. Translation: CAE79128.1.
RefSeqiWP_011163730.1. NC_005363.1.

3D structure databases

ProteinModelPortaliQ6MNM3.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi264462.Bd1224.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAE79128; CAE79128; Bd1224.
KEGGibba:Bd1224.
PATRICi21077054. VBIBdeBac73187_1107.

Phylogenomic databases

HOGENOMiHOG000253313.
KOiK01176.
OMAiVAINHES.
OrthoDBiEOG6RZB1B.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR006048. A-amylase_b_C.
IPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
[Graphical view]
PRINTSiPR00110. ALPHAAMYLASE.
SMARTiSM00642. Aamy. 1 hit.
SM00632. Aamy_C. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "A predator unmasked: life cycle of Bdellovibrio bacteriovorus from a genomic perspective."
    Rendulic S., Jagtap P., Rosinus A., Eppinger M., Baar C., Lanz C., Keller H., Lambert C., Evans K.J., Goesmann A., Meyer F., Sockett R.E., Schuster S.C.
    Science 303:689-692(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 15356 / DSM 50701 / NCIB 9529 / HD100Imported.

Entry informationi

Entry nameiQ6MNM3_BDEBA
AccessioniPrimary (citable) accession number: Q6MNM3
Entry historyi
Integrated into UniProtKB/TrEMBL: July 5, 2004
Last sequence update: July 5, 2004
Last modified: July 22, 2015
This is version 76 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.