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Q6MG13 (Q6MG13_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 76. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 16 EMBL CAE84034.1
Submitted name:
DEAH (Asp-Glu-Ala-His) box polypeptide 16 EMBL EDL86735.1
Submitted name:
Protein Dhx16 Ensembl ENSRNOP00000062603
Gene names
Name:Dhx16 RGD 1302963 Ensembl ENSRNOP00000062603 EMBL EDL86735.1
Synonyms:2310ex4-5 RGD 1594428, 2331ex4-5 RGD 1594427, 2361ex4-5 RGD 1594425, Ddx16 EMBL CAE84034.1, Flot1 RGD 70991, Gnl1 RGD 1303051, Kiaa1949 RGD 1594429, Rpl41-ps RGD 1594426, Rps2-ps1 RGD 1595735, Rps2-ps2 RGD 1595733, RT1-O2 RGD 1595734, RT1-O3 RGD 1595732, RT1-S2 RGD 1595920, RT1-S3 RGD 735037, RT1-T24-1 RGD 1359499, RT1-T24-2 RGD 1303033, Tubb5 RGD 628596
ORF Names:rCG_41808 EMBL EDL86735.1
OrganismRattus norvegicus (Rat) [Reference proteome] EMBL CAE84034.1
Taxonomic identifier10116 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length1044 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Sequence similarities

Contains 1 helicase ATP-binding domain. SAAS SAAS007502

Contains 1 helicase C-terminal domain. SAAS SAAS007502

Sequences

Sequence LengthMass (Da)Tools
Q6MG13 [UniParc].

Last modified July 5, 2004. Version 1.
Checksum: 9B4429E6C23FABCF

FASTA1,044119,264
        10         20         30         40         50         60 
MATPAGLERW VQEELHSVLG LSERHVAQFL IGTAQRCASA EEFVQRLRDT ETLDLGGPAR 

        70         80         90        100        110        120 
DFALKLWSKV PRKAVVEKPA RAAEREARAL LEKNRSYKLL EDSESGEEAV ARDGSSLQKK 

       130        140        150        160        170        180 
RKRRKHLRKK QQEEEEEEEE ASESGKRKTG GSKSPTEEKP ASEDEWERTE RERLQDLEER 

       190        200        210        220        230        240 
DAFAERVRQR DKDRTRNVLE RSDKKAYEEA QKRLKMAEED RKAMVPELRK KSRREYLAKR 

       250        260        270        280        290        300 
EREKLEDLEA ELADEEVLFG DVELSRHERR ELKYKRRVRD LAREYRAAGE QEKLEATNRY 

       310        320        330        340        350        360 
HMPKETRGQP ARATDIVEEE SGAPGEEQRR WEEARLDAAS LKFGARDAAA QEPQYQLVLE 

       370        380        390        400        410        420 
EDETIEFVRA AQLQGDEEPS SGPPLSAQAQ QKESIQAVRR SLPVFPFREE LLTAIANHQV 

       430        440        450        460        470        480 
LIIEGETGSG KTTQIPQYLF EEGYTKKGMK IACTQPRRVA AMSVAARVAR EMGVKLGNEV 

       490        500        510        520        530        540 
GYSIRFEDCT SERTVLRYMT DGMLLREFLS EPDLASYSVV MVDEAHERTL HTDILFGLIK 

       550        560        570        580        590        600 
DVARFRPELK VLVASATLDT ARFSAFFDDA PVFRIPGRRF PVDIFYTKAP EADYLEACVV 

       610        620        630        640        650        660 
SVLQIHVTQP PGDILVFLTG QEEIEAACEM LQDRCRRLGS KIRELLVLPI YANLPSDMQA 

       670        680        690        700        710        720 
RIFQPTPPGA RKVVVATNIA ETSLTIEGII YVLDPGFCKQ KSYNPRTGME SLTVTPCSKA 

       730        740        750        760        770        780 
SANQRAGRAG RVAAGKCFRL YTAWAYQHEL EETTVPEIQR TSLGNVVLLL KSLGIHDLMH 

       790        800        810        820        830        840 
FDFLDPPPYE TLLLALEQLY ALGALNHLGE LTTSGRKMAE LPVDPMLSKM ILASEKYSCS 

       850        860        870        880        890        900 
EEILTVAAML SVNNSIFYRP KDKVVHADNA RVNFFLPGGD HLVLLNVYTQ WAESGYSSQW 

       910        920        930        940        950        960 
CYENFVQFRS MRRARDVREQ LEGLLERVEV GLTSCQGDYV RVRKAITSGY FYHTARLTRS 

       970        980        990       1000       1010       1020 
GYRTVKQQQT VFIHPNSSLF EQQPRWLLYH ELVLTTKEFM RQVLEIESSW LLEVAPHYYK 

      1030       1040 
AKELEDPHAK KMPKKVGKTR EELG

« Hide

References

« Hide 'large scale' references
[1]Shiina T., Inoko H.
Submitted (DEC-2003) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Brown Norway EMBL CAE84034.1.
[2]Boehm S., Borzym K., Gelling S., Gimmel V., Heitmann K., Kosiura A., Lang N., Lehrack S., Thiel J., Sontag M., Hurt P., Himmelbauer H., Sudbrak R., Reinhardt R.
Submitted (DEC-2003) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Brown Norway EMBL CAE84034.1.
[3]"The genomic sequence and comparative analysis of the rat major histocompatibility complex."
Hurt P., Walter L., Sudbrak R., Klages S., Mueller I., Shiina T., Inoko H., Lehrach H., Guenther E., Reinhardt R., Himmelbauer H.
Genome Res. 14:631-639(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Brown Norway EMBL CAE84034.1.
[4]"Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
Rat Genome Sequencing Project Consortium
Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M. expand/collapse author list , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Brown Norway Ensembl ENSRNOP00000062603.
[5]"Gene and alternative splicing annotation with AIR."
Florea L., Di Francesco V., Miller J., Turner R., Yao A., Harris M., Walenz B., Mobarry C., Merkulov G.V., Charlab R., Dew I., Deng Z., Istrail S., Li P., Sutton G.
Genome Res. 15:54-66(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: BN EMBL EDL86735.1.
[6]Mural R.J., Li P.W., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S.H., Dew I., Evans C.A., Ferriera S., Flanigan M., Fosler C., Glodek A., Gu Z., Holt R.A., Jennings D., Kraft C.L., Lu F. expand/collapse author list , Nguyen T., Nusskern D.R., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Wang Z., Woodage T., Zheng X.H., Zhong F.
Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: BN EMBL EDL86735.1.
[7]Ensembl
Submitted (JUL-2011) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Brown Norway Ensembl ENSRNOP00000062603.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AABR06099822 Genomic DNA. No translation available.
AABR06099823 Genomic DNA. No translation available.
BX883048 Genomic DNA. Translation: CAE84034.1.
CH474118 Genomic DNA. Translation: EDL86735.1.
IPIIPI00421973.
RefSeqNP_997661.1. NM_212496.2.
UniGeneRn.6832.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRING10116.ENSRNOP00000046021.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSRNOT00000065025; ENSRNOP00000062603; ENSRNOG00000030157.
GeneID294232.
KEGGrno:294232.
UCSCRGD:1302963. rat.

Organism-specific databases

CTD8449.
RGD1302963. Dhx16.

Phylogenomic databases

eggNOGCOG1643.
GeneTreeENSGT00700000104241.
HOVERGENHBG039428.
KOK12813.

Gene expression databases

GenevestigatorQ6MG13.

Family and domain databases

InterProIPR011545. DNA/RNA_helicase_DEAD/DEAH_N.
IPR002464. DNA/RNA_helicase_DEAH_CS.
IPR011709. DUF1605.
IPR007502. Helicase-assoc_dom.
IPR014001. Helicase_ATP-bd.
IPR001650. Helicase_C.
[Graphical view]
PfamPF00270. DEAD. 1 hit.
PF04408. HA2. 1 hit.
PF00271. Helicase_C. 1 hit.
PF07717. OB_NTP_bind. 1 hit.
[Graphical view]
SMARTSM00487. DEXDc. 1 hit.
SM00847. HA2. 1 hit.
SM00490. HELICc. 1 hit.
[Graphical view]
PROSITEPS00690. DEAH_ATP_HELICASE. 1 hit.
PS51192. HELICASE_ATP_BIND_1. 1 hit.
PS51194. HELICASE_CTER. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio35566139.

Entry information

Entry nameQ6MG13_RAT
AccessionPrimary (citable) accession number: Q6MG13
Secondary accession number(s): D3ZB40
Entry history
Integrated into UniProtKB/TrEMBL: July 5, 2004
Last sequence update: July 5, 2004
Last modified: May 1, 2013
This is version 76 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info