Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Probable tRNA pseudouridine synthase D 1

Gene

truD1

Organism
Methanococcus maripaludis (strain S2 / LL)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Could be responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs.By similarity

Catalytic activityi

tRNA uridine(13) = tRNA pseudouridine(13).

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Active sitei63NucleophileBy similarity1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionIsomerase
Biological processtRNA processing

Names & Taxonomyi

Protein namesi
Recommended name:
Probable tRNA pseudouridine synthase D 1 (EC:5.4.99.27)
Alternative name(s):
tRNA pseudouridine(13) synthase
tRNA pseudouridylate synthase D 1
tRNA-uridine isomerase D 1
Gene namesi
Name:truD1
Ordered Locus Names:MMP0014
OrganismiMethanococcus maripaludis (strain S2 / LL)
Taxonomic identifieri267377 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaMethanococciMethanococcalesMethanococcaceaeMethanococcus
Proteomesi
  • UP000000590 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001525441 – 389Probable tRNA pseudouridine synthase D 1Add BLAST389

Interactioni

Protein-protein interaction databases

STRINGi267377.MMP0014.

Structurei

3D structure databases

ProteinModelPortaliQ6M1A3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini135 – 345TRUDPROSITE-ProRule annotationAdd BLAST211

Sequence similaritiesi

Belongs to the pseudouridine synthase TruD family.Curated

Phylogenomic databases

eggNOGiarCOG04252. Archaea.
COG0585. LUCA.
HOGENOMiHOG000254431.
KOiK06176.
OMAiYFDSQRF.
OrthoDBiPOG093Z087N.

Family and domain databases

InterProiView protein in InterPro
IPR020103. PsdUridine_synth_cat_dom_sf.
IPR001656. PsdUridine_synth_TruD.
IPR020119. PsdUridine_synth_TruD_CS.
IPR011760. PsdUridine_synth_TruD_insert.
PANTHERiPTHR13326. PTHR13326. 2 hits.
PfamiView protein in Pfam
PF01142. TruD. 1 hit.
PIRSFiPIRSF037016. Pseudouridin_synth_euk_prd. 1 hit.
SUPFAMiSSF55120. SSF55120. 2 hits.
TIGRFAMsiTIGR00094. tRNA_TruD_broad. 1 hit.
PROSITEiView protein in PROSITE
PS50984. TRUD. 1 hit.
PS01268. UPF0024. 1 hit.

Sequencei

Sequence statusi: Complete.

Q6M1A3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKFRQKHEDF IVNEILEYEL NDYGNYFLYK LQKNGIENLK AISYLSKNFE
60 70 80 90 100
VPTKEIGYCG LKDRHAITTQ YVSIPKEYGK LSLDEDNLKL EYVGTIEKPL
110 120 130 140 150
KIGRLYGNRF EIIARAVDKD EFLKIADNIR NLSSGAPNYY DDQRFGSVFN
160 170 180 190 200
GKFIAKEILK GNYEEVVKIL LTSYTKSEKK QLKDLKRFIA KNWGNWDECL
210 220 230 240 250
EYIDKKQIRS KMFRNMVKSL TYENDFKKAF KYVDNRLKEL FISAYQSYLW
260 270 280 290 300
NECLKEFLKE VIPKENRIYV DYSCGTFLFY ENIEEELFDK LKEMDFPTIV
310 320 330 340 350
SDVEYTDPEK RIIKAILKKE RIKISDFEKL DFGKLKYTKR PIISIPEDVN
360 370 380
TGKFKSDELN SKKYKIDLEF SLKKGSYATI ILKRVFNIL
Length:389
Mass (Da):46,201
Last modified:July 5, 2004 - v1
Checksum:i15F89137BFB03189
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX950229 Genomic DNA. Translation: CAF29570.1.
RefSeqiWP_011169958.1. NC_005791.1.

Genome annotation databases

EnsemblBacteriaiCAF29570; CAF29570; MMP0014.
GeneIDi2762446.
KEGGimmp:MMP0014.
PATRICifig|267377.15.peg.14.

Similar proteinsi

Entry informationi

Entry nameiTRUD1_METMP
AccessioniPrimary (citable) accession number: Q6M1A3
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 26, 2005
Last sequence update: July 5, 2004
Last modified: November 22, 2017
This is version 67 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families