Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Q6M1A3

- TRUD1_METMP

UniProt

Q6M1A3 - TRUD1_METMP

Protein

Probable tRNA pseudouridine synthase D 1

Gene

truD1

Organism
Methanococcus maripaludis (strain S2 / LL)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 53 (01 Oct 2014)
      Sequence version 1 (05 Jul 2004)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    Could be responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs.By similarity

    Catalytic activityi

    tRNA uridine(13) = tRNA pseudouridine(13).

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei63 – 631NucleophileBy similarity

    GO - Molecular functioni

    1. pseudouridine synthase activity Source: InterPro
    2. RNA binding Source: InterPro

    GO - Biological processi

    1. pseudouridine synthesis Source: InterPro
    2. tRNA processing Source: UniProtKB-KW

    Keywords - Molecular functioni

    Isomerase

    Keywords - Biological processi

    tRNA processing

    Enzyme and pathway databases

    BioCyciMMAR267377:GJ77-20-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Probable tRNA pseudouridine synthase D 1 (EC:5.4.99.27)
    Alternative name(s):
    tRNA pseudouridine(13) synthase
    tRNA pseudouridylate synthase D 1
    tRNA-uridine isomerase D 1
    Gene namesi
    Name:truD1
    Ordered Locus Names:MMP0014
    OrganismiMethanococcus maripaludis (strain S2 / LL)
    Taxonomic identifieri267377 [NCBI]
    Taxonomic lineageiArchaeaEuryarchaeotaMethanococciMethanococcalesMethanococcaceaeMethanococcus
    ProteomesiUP000000590: Chromosome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 389389Probable tRNA pseudouridine synthase D 1PRO_0000152544Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi267377.MMP0014.

    Structurei

    3D structure databases

    ProteinModelPortaliQ6M1A3.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini135 – 345211TRUDPROSITE-ProRule annotationAdd
    BLAST

    Sequence similaritiesi

    Belongs to the pseudouridine synthase TruD family.Curated
    Contains 1 TRUD domain.PROSITE-ProRule annotation

    Phylogenomic databases

    eggNOGiCOG0585.
    HOGENOMiHOG000254431.
    KOiK06176.
    OMAiYCGLKDR.

    Family and domain databases

    InterProiIPR020103. PsdUridine_synth_cat_dom.
    IPR001656. PsdUridine_synth_TruD.
    IPR020119. PsdUridine_synth_TruD_CS.
    IPR011760. PsdUridine_synth_TruD_insert.
    [Graphical view]
    PANTHERiPTHR13326. PTHR13326. 1 hit.
    PfamiPF01142. TruD. 1 hit.
    [Graphical view]
    SUPFAMiSSF55120. SSF55120. 2 hits.
    TIGRFAMsiTIGR00094. tRNA_TruD_broad. 1 hit.
    PROSITEiPS50984. TRUD. 1 hit.
    PS01268. UPF0024. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q6M1A3-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKFRQKHEDF IVNEILEYEL NDYGNYFLYK LQKNGIENLK AISYLSKNFE    50
    VPTKEIGYCG LKDRHAITTQ YVSIPKEYGK LSLDEDNLKL EYVGTIEKPL 100
    KIGRLYGNRF EIIARAVDKD EFLKIADNIR NLSSGAPNYY DDQRFGSVFN 150
    GKFIAKEILK GNYEEVVKIL LTSYTKSEKK QLKDLKRFIA KNWGNWDECL 200
    EYIDKKQIRS KMFRNMVKSL TYENDFKKAF KYVDNRLKEL FISAYQSYLW 250
    NECLKEFLKE VIPKENRIYV DYSCGTFLFY ENIEEELFDK LKEMDFPTIV 300
    SDVEYTDPEK RIIKAILKKE RIKISDFEKL DFGKLKYTKR PIISIPEDVN 350
    TGKFKSDELN SKKYKIDLEF SLKKGSYATI ILKRVFNIL 389
    Length:389
    Mass (Da):46,201
    Last modified:July 5, 2004 - v1
    Checksum:i15F89137BFB03189
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BX950229 Genomic DNA. Translation: CAF29570.1.
    RefSeqiNP_987134.1. NC_005791.1.
    WP_011169958.1. NC_005791.1.

    Genome annotation databases

    EnsemblBacteriaiCAF29570; CAF29570; MMP0014.
    GeneIDi2762446.
    KEGGimmp:MMP0014.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BX950229 Genomic DNA. Translation: CAF29570.1 .
    RefSeqi NP_987134.1. NC_005791.1.
    WP_011169958.1. NC_005791.1.

    3D structure databases

    ProteinModelPortali Q6M1A3.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 267377.MMP0014.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai CAF29570 ; CAF29570 ; MMP0014 .
    GeneIDi 2762446.
    KEGGi mmp:MMP0014.

    Phylogenomic databases

    eggNOGi COG0585.
    HOGENOMi HOG000254431.
    KOi K06176.
    OMAi YCGLKDR.

    Enzyme and pathway databases

    BioCyci MMAR267377:GJ77-20-MONOMER.

    Family and domain databases

    InterProi IPR020103. PsdUridine_synth_cat_dom.
    IPR001656. PsdUridine_synth_TruD.
    IPR020119. PsdUridine_synth_TruD_CS.
    IPR011760. PsdUridine_synth_TruD_insert.
    [Graphical view ]
    PANTHERi PTHR13326. PTHR13326. 1 hit.
    Pfami PF01142. TruD. 1 hit.
    [Graphical view ]
    SUPFAMi SSF55120. SSF55120. 2 hits.
    TIGRFAMsi TIGR00094. tRNA_TruD_broad. 1 hit.
    PROSITEi PS50984. TRUD. 1 hit.
    PS01268. UPF0024. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: S2 / LL.

    Entry informationi

    Entry nameiTRUD1_METMP
    AccessioniPrimary (citable) accession number: Q6M1A3
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: April 26, 2005
    Last sequence update: July 5, 2004
    Last modified: October 1, 2014
    This is version 53 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3