Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Replication protein A

Gene

rpa

Organism
Methanococcus maripaludis (strain S2 / LL)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Enzyme and pathway databases

BioCyciMMAR267377:GJ77-1062-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Replication protein AImported
Gene namesi
Name:rpaImported
Ordered Locus Names:MMP1032Imported
OrganismiMethanococcus maripaludis (strain S2 / LL)Imported
Taxonomic identifieri267377 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaMethanococciMethanococcalesMethanococcaceaeMethanococcus
Proteomesi
  • UP000000590 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi267377.MMP1032.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2K5VNMR-A173-267[»]
3E0EX-ray1.60A173-267[»]
ProteinModelPortaliQ6LYF9.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ6LYF9.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini74 – 14976OB DNA-bindingInterPro annotationAdd
BLAST
Domaini191 – 26373OB DNA-bindingInterPro annotationAdd
BLAST
Domaini290 – 36071OB DNA-bindingInterPro annotationAdd
BLAST
Domaini406 – 47570OB DNA-bindingInterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiarCOG01510. Archaea.
COG1599. LUCA.
HOGENOMiHOG000254116.
KOiK07466.
OMAiNAFSRKW.

Family and domain databases

Gene3Di2.40.50.140. 5 hits.
InterProiIPR012340. NA-bd_OB-fold.
IPR004365. NA-bd_OB_tRNA.
[Graphical view]
PfamiPF01336. tRNA_anti-codon. 4 hits.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 5 hits.

Sequencei

Sequence statusi: Complete.

Q6LYF9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNIDKLKQKI LSKISEKELE KKVNEKIEEN SGLLGEESAV MLVAQELGIE
60 70 80 90 100
ITYGDDEEEY DFSIKDIADG QKNVEVTGKI IEISPAKDFN RKDGSTGKLA
110 120 130 140 150
SVTIGDNTGI TRLTLWNDKT DLIEGLKKGD VVKIENAFSR KWNDKVELNS
160 170 180 190 200
GSELSIEKLK KYDESRYPIL KDNYKISELM PNLSGTINAE VVTAYPKKEF
210 220 230 240 250
SRKDGTKGQL KSLFLKDDTG SIRGTLWNEL ADFEVKKGDI AEVSGYVKQG
260 270 280 290 300
YSGLEISVDN IGIIEKSVKE EKPVEKLSIS ELTSFDGEYV TVSGNIVNIS
310 320 330 340 350
GSREVQFSDR TAEVQDIYIN DGTGMVKTAF WGTNRSILDG LKEGDYVTIS
360 370 380 390 400
NAKLRTYTDN TGEKRADLTY NYMSELKKDE SASKKILEEI TEIKDILNGS
410 420 430 440 450
AENSDVTVVA MVTNAYPVNE FQRSSGGTGK VRNIMLEDGT GSIRMALWDS
460 470 480 490 500
DAETEISEGD VVKLIHGYAK ESGEYMDLST GRFGRIEVNP KGVSIKSPRN
510 520 530 540 550
YIADLEEGVS TEISGTIVDY RKQDVILNLC PNCRKRLNLV DNKYLCEVCG
560 570 580 590 600
EVEPNELLVS NLTVDDGTGV INCRVYGSNV EKVTELSKNK LKEMNMDALA
610 620 630 640
DVLGKDVLFY GTPSFRNDDL DFAVKRVNFV DVSKELEVLK QH
Length:642
Mass (Da):71,388
Last modified:July 5, 2004 - v1
Checksum:i0B6C53BB0AAA7296
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX950229 Genomic DNA. Translation: CAF30588.1.
RefSeqiWP_011170976.1. NC_005791.1.

Genome annotation databases

EnsemblBacteriaiCAF30588; CAF30588; MMP1032.
GeneIDi2761413.
KEGGimmp:MMP1032.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX950229 Genomic DNA. Translation: CAF30588.1.
RefSeqiWP_011170976.1. NC_005791.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2K5VNMR-A173-267[»]
3E0EX-ray1.60A173-267[»]
ProteinModelPortaliQ6LYF9.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi267377.MMP1032.

Protocols and materials databases

DNASUi2761413.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAF30588; CAF30588; MMP1032.
GeneIDi2761413.
KEGGimmp:MMP1032.

Phylogenomic databases

eggNOGiarCOG01510. Archaea.
COG1599. LUCA.
HOGENOMiHOG000254116.
KOiK07466.
OMAiNAFSRKW.

Enzyme and pathway databases

BioCyciMMAR267377:GJ77-1062-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ6LYF9.

Family and domain databases

Gene3Di2.40.50.140. 5 hits.
InterProiIPR012340. NA-bd_OB-fold.
IPR004365. NA-bd_OB_tRNA.
[Graphical view]
PfamiPF01336. tRNA_anti-codon. 4 hits.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 5 hits.
ProtoNetiSearch...

Entry informationi

Entry nameiQ6LYF9_METMP
AccessioniPrimary (citable) accession number: Q6LYF9
Entry historyi
Integrated into UniProtKB/TrEMBL: July 5, 2004
Last sequence update: July 5, 2004
Last modified: March 16, 2016
This is version 78 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.