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Protein

Purine nucleoside phosphorylase DeoD-type 1

Gene

deoD1

Organism
Photobacterium profundum (strain SS9)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Catalytic activityi

Purine nucleoside + phosphate = purine + alpha-D-ribose 1-phosphate.UniRule annotation
Purine deoxynucleoside + phosphate = purine + 2'-deoxy-alpha-D-ribose 1-phosphate.UniRule annotation

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Binding sitei5Purine nucleoside; shared with dimeric partnerBy similarity1
Binding sitei21Phosphate; via amide nitrogenBy similarity1
Binding sitei25PhosphateBy similarity1
Binding sitei44Phosphate; shared with dimeric partnerBy similarity1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionGlycosyltransferase, Transferase

Names & Taxonomyi

Protein namesi
Recommended name:
Purine nucleoside phosphorylase DeoD-type 1UniRule annotation (EC:2.4.2.1UniRule annotation)
Short name:
PNP 1UniRule annotation
Gene namesi
Name:deoD1UniRule annotation
Ordered Locus Names:PBPRA0633
OrganismiPhotobacterium profundum (strain SS9)
Taxonomic identifieri298386 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaePhotobacterium
Proteomesi
  • UP000000593 Componenti: Chromosome 1

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000631511 – 241Purine nucleoside phosphorylase DeoD-type 1Add BLAST241

Proteomic databases

PRIDEiQ6LUH1

Interactioni

Subunit structurei

Homohexamer.UniRule annotation

Protein-protein interaction databases

STRINGi298386.PBPRA0633

Structurei

3D structure databases

ProteinModelPortaliQ6LUH1
SMRiQ6LUH1
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni88 – 91Phosphate bindingBy similarity4
Regioni180 – 182Purine nucleoside bindingBy similarity3
Regioni204 – 205Purine nucleoside bindingBy similarity2

Sequence similaritiesi

Belongs to the PNP/UDP phosphorylase family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105D3A Bacteria
COG0813 LUCA
HOGENOMiHOG000274896
KOiK03784
OMAiPQCLLCG
OrthoDBiPOG091H02M1

Family and domain databases

HAMAPiMF_01627 Pur_nucleosid_phosp, 1 hit
InterProiView protein in InterPro
IPR004402 DeoD-type
IPR018016 Nucleoside_phosphorylase_CS
IPR000845 Nucleoside_phosphorylase_d
IPR035994 Nucleoside_phosphorylase_sf
PANTHERiPTHR43691:SF2 PTHR43691:SF2, 1 hit
PfamiView protein in Pfam
PF01048 PNP_UDP_1, 1 hit
SUPFAMiSSF53167 SSF53167, 1 hit
TIGRFAMsiTIGR00107 deoD, 1 hit
PROSITEiView protein in PROSITE
PS01232 PNP_UDP_1, 1 hit

Sequencei

Sequence statusi: Complete.

Q6LUH1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATPHINAEM GDFADVVLMP GDPLRAKYIA ETFLQDVKEV CNVRSMFGYT
60 70 80 90 100
GTYKGRKISV MGHGMGIPSC SIYATELIKD FGVKKIIRVG SCGAVRDDVK
110 120 130 140 150
LRDVVIGMGA STDSKVNRIR FGGHDFAAIA DFGMVQNAVD AAKAKGIPVK
160 170 180 190 200
VGNIFSADLF YNPDFEFFKT MDKYGIVGVE MEAAGIYGVA AEFGAKALTI
210 220 230 240
CTVSDHILRG EATTSEERQL TFNEMMEIAL ESVLLGDADE A
Length:241
Mass (Da):26,036
Last modified:July 5, 2004 - v1
Checksum:i392EDEB2F948B130
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CR378664 Genomic DNA Translation: CAG19054.1
RefSeqiWP_006230712.1, NC_006370.1

Genome annotation databases

EnsemblBacteriaiCAG19054; CAG19054; PBPRA0633
KEGGippr:PBPRA0633

Similar proteinsi

Entry informationi

Entry nameiDEOD1_PHOPR
AccessioniPrimary (citable) accession number: Q6LUH1
Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 10, 2006
Last sequence update: July 5, 2004
Last modified: March 28, 2018
This is version 80 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health