Q6LS17 (Q6LS17_PHOPR) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Hypothetical Glutamate decarboxylase EMBL CAG19909.1

Gene names

Name:	SO1769 EMBL CAG19909.1
Ordered Locus Names:	PBPRA1498 EMBL CAG19909.1

Organism

Photobacterium profundum (Photobacterium sp. (strain SS9)) [Complete proteome] [HAMAP] EMBL CAG19909.1

Taxonomic identifier

74109 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Vibrionales › Vibrionaceae › Photobacterium

Protein attributes

Sequence length	549 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Cofactor	Pyridoxal phosphate By similarity. RuleBase RU000382
Sequence similarities	Belongs to the group II decarboxylase family. RuleBase RU000382

Ontologies

Keywords
Ligand	Pyridoxal phosphate RuleBase RU000382
Molecular function	Lyase RuleBase RU000382
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	carboxylic acid metabolic process Inferred from electronic annotation. Source: InterPro
Molecular_function	carboxy-lyase activity Inferred from electronic annotation. Source: InterPro pyridoxal phosphate binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q6LS17 [UniParc]. Last modified July 5, 2004. Version 1. Checksum: A2B793E026ADF5A6	FASTA	549	61,308
	10 20 30 40 50 60 MAVDNRKADA TLESLHRIFT VPEAPESTLG LIEQKISQNL NEFLGTHIAA REKPLIEIEK 70 80 90 100 110 120 DFSSAEIPEN PSFVSDHTQF LLTKLVAQSV HTSAPSFIGH MTSALPYFLM PLSKIMIGLN 130 140 150 160 170 180 QNLVKIETSK AFTPLERQVL GMMHNLIFNE ETSFYQQWMH SADHSLGAFC SGGTIANITA 190 200 210 220 230 240 LWVARNNVLK PDGEFKGVAN EGLFRAMKHY GYDDLAILVS ERGHYSLKKA ADVLGIGRDC 250 260 270 280 290 300 LIPIKTDDNN RIRVDDLTAT LQSLKEKNIK PFAIIGVAGT TETGNIDPLD ELADIAQAHD 310 320 330 340 350 360 CHFHVDAAWG GATLMSNKYR SLLKGIERAD SITIDAHKQL YVPMGAGMVI FKNPALMTSI 370 380 390 400 410 420 EHHAEYILRK GSKDLGSHTL EGSRSGMAML LFASLNIISR QGYEMLINNS IDKAKHFANM 430 440 450 460 470 480 VKQDPDFELV TEPELCLLTY RYVPAETQQA LTIANAEDKH LLHDALNDLT KFIQKRQRES 490 500 510 520 530 540 GKSFVSRTRL TPEKWDHKIT TVFRVVLANP LTTDNILQDV LIEQKELAKE SVHSLPRLFT LTKRILANN

References

[1]

"Life at depth: Photobacterium profundum genome sequence and expression analysis." Vezzi A., Campanaro S., D'Angelo M., Simonato F., Vitulo N., Lauro F.M., Cestaro A., Malacrida G., Simionati B., Cannata N., Romualdi C., Bartlett D.H., Valle G. Science 307:1459-1461(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: SS9.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CR378667 Genomic DNA. Translation: CAG19909.1.
RefSeq	YP_129711.1. NC_006370.1.
3D structure databases
ProteinModelPortal	Q6LS17.
ModBase	Search...
Protein-protein interaction databases
STRING	298386.PBPRA1498.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	CAG19909; CAG19909; PBPRA1498.
GeneID	3122054.
KEGG	ppr:PBPRA1498.
PATRIC	22933838. VBIPhoPro109272_1633.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000282553.
KO	K01580.
OMA	CHFHVDA.
ProtClustDB	CLSK874231.
Family and domain databases
Gene3D	3.40.640.10. 1 hit. 3.90.1150.10. 1 hit.
InterPro	IPR022517. Asp_decarboxylase_pyridox. IPR002129. PyrdxlP-dep_de-COase. IPR015424. PyrdxlP-dep_Trfase. IPR015421. PyrdxlP-dep_Trfase_major_sub1. IPR015422. PyrdxlP-dep_Trfase_major_sub2. [Graphical view]
Pfam	PF00282. Pyridoxal_deC. 1 hit. [Graphical view]
SUPFAM	SSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
TIGRFAMs	TIGR03799. NOD_PanD_pyr. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Q6LS17_PHOPR

Accession

Primary (citable) accession number: Q6LS17

Entry history

Integrated into UniProtKB/TrEMBL:	July 5, 2004
Last sequence update:	July 5, 2004
Last modified:	May 1, 2013
This is version 57 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)