Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

Q6LS17 (Q6LS17_PHOPR) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 61. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names
Gene names
Name:SO1769 EMBL CAG19909.1
Ordered Locus Names:PBPRA1498 EMBL CAG19909.1
OrganismPhotobacterium profundum (Photobacterium sp. (strain SS9)) [Complete proteome] [HAMAP] EMBL CAG19909.1
Taxonomic identifier74109 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaePhotobacterium

Protein attributes

Sequence length549 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Pyridoxal phosphate By similarity. RuleBase RU000382

Sequence similarities

Belongs to the group II decarboxylase family. RuleBase RU000382

Ontologies

Sequences

Sequence LengthMass (Da)Tools
Q6LS17 [UniParc].

Last modified July 5, 2004. Version 1.
Checksum: A2B793E026ADF5A6

FASTA54961,308
        10         20         30         40         50         60 
MAVDNRKADA TLESLHRIFT VPEAPESTLG LIEQKISQNL NEFLGTHIAA REKPLIEIEK 

        70         80         90        100        110        120 
DFSSAEIPEN PSFVSDHTQF LLTKLVAQSV HTSAPSFIGH MTSALPYFLM PLSKIMIGLN 

       130        140        150        160        170        180 
QNLVKIETSK AFTPLERQVL GMMHNLIFNE ETSFYQQWMH SADHSLGAFC SGGTIANITA 

       190        200        210        220        230        240 
LWVARNNVLK PDGEFKGVAN EGLFRAMKHY GYDDLAILVS ERGHYSLKKA ADVLGIGRDC 

       250        260        270        280        290        300 
LIPIKTDDNN RIRVDDLTAT LQSLKEKNIK PFAIIGVAGT TETGNIDPLD ELADIAQAHD 

       310        320        330        340        350        360 
CHFHVDAAWG GATLMSNKYR SLLKGIERAD SITIDAHKQL YVPMGAGMVI FKNPALMTSI 

       370        380        390        400        410        420 
EHHAEYILRK GSKDLGSHTL EGSRSGMAML LFASLNIISR QGYEMLINNS IDKAKHFANM 

       430        440        450        460        470        480 
VKQDPDFELV TEPELCLLTY RYVPAETQQA LTIANAEDKH LLHDALNDLT KFIQKRQRES 

       490        500        510        520        530        540 
GKSFVSRTRL TPEKWDHKIT TVFRVVLANP LTTDNILQDV LIEQKELAKE SVHSLPRLFT 


LTKRILANN 

« Hide

References

[1]"Life at depth: Photobacterium profundum genome sequence and expression analysis."
Vezzi A., Campanaro S., D'Angelo M., Simonato F., Vitulo N., Lauro F.M., Cestaro A., Malacrida G., Simionati B., Cannata N., Romualdi C., Bartlett D.H., Valle G.
Science 307:1459-1461(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: SS9.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CR378667 Genomic DNA. Translation: CAG19909.1.
RefSeqYP_129711.1. NC_006370.1.

3D structure databases

ProteinModelPortalQ6LS17.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING298386.PBPRA1498.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAG19909; CAG19909; PBPRA1498.
GeneID3122054.
KEGGppr:PBPRA1498.
PATRIC22933838. VBIPhoPro109272_1633.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000282553.
KOK01580.
OMAARYFRQP.
OrthoDBEOG6MSRZP.

Enzyme and pathway databases

BioCycPPRO298386-WGS:GSSB-1500-MONOMER.

Family and domain databases

Gene3D3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProIPR022517. Asp_decarboxylase_pyridox.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMSSF53383. SSF53383. 1 hit.
TIGRFAMsTIGR03799. NOD_PanD_pyr. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ6LS17_PHOPR
AccessionPrimary (citable) accession number: Q6LS17
Entry history
Integrated into UniProtKB/TrEMBL: July 5, 2004
Last sequence update: July 5, 2004
Last modified: July 9, 2014
This is version 61 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)