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Q6LM08

- Q6LM08_PHOPR

UniProt

Q6LM08 - Q6LM08_PHOPR

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Protein
Alanine racemase
Gene
ALR, PBPRA3385
Organism
Photobacterium profundum (Photobacterium sp. (strain SS9))
Status
Unreviewed - Annotation score: 3 out of 5 - Experimental evidence at protein leveli

Functioni

Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids By similarity.UniRule annotation

Catalytic activityi

L-alanine = D-alanine.UniRule annotationSAAS annotations

Cofactori

Pyridoxal phosphate By similarity.UniRule annotationSAAS annotations

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei72 – 721Proton acceptor; specific for D-alanine By similarityUniRule annotation
Binding sitei171 – 1711Substrate By similarityUniRule annotation
Active sitei297 – 2971Proton acceptor; specific for L-alanine By similarityUniRule annotation
Binding sitei345 – 3451Substrate; via amide nitrogen By similarityUniRule annotation

GO - Molecular functioni

  1. alanine racemase activity Source: UniProtKB-HAMAP
  2. pyridoxal phosphate binding Source: UniProtKB-HAMAP

GO - Biological processi

  1. D-alanine biosynthetic process Source: UniProtKB-UniPathway
Complete GO annotation...

Keywords - Molecular functioni

IsomeraseUniRule annotationSAAS annotations

Keywords - Ligandi

Pyridoxal phosphateUniRule annotationSAAS annotations

Enzyme and pathway databases

BioCyciPPRO298386-WGS:GSSB-3378-MONOMER.
UniPathwayiUPA00042; UER00497.

Names & Taxonomyi

Protein namesi
Recommended name:
Alanine racemaseUniRule annotation (EC:5.1.1.1UniRule annotation)
Gene namesi
Name:ALRImported
Ordered Locus Names:PBPRA3385Imported
OrganismiPhotobacterium profundum (Photobacterium sp. (strain SS9))Imported
Taxonomic identifieri74109 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaePhotobacterium
ProteomesiUP000000593: Chromosome 1

PTM / Processingi

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei72 – 721N6-(pyridoxal phosphate)lysine By similarityUniRule annotation

Interactioni

Protein-protein interaction databases

STRINGi298386.PBPRA3385.

Structurei

3D structure databases

ProteinModelPortaliQ6LM08.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

HOGENOMiHOG000279190.
KOiK01775.
OMAiHVANSYI.
OrthoDBiEOG6PP9NJ.

Family and domain databases

Gene3Di2.40.37.10. 1 hit.
3.20.20.10. 1 hit.
HAMAPiMF_01201. Ala_racemase.
InterProiIPR000821. Ala_racemase.
IPR009006. Ala_racemase/Decarboxylase_C.
IPR011079. Ala_racemase_C.
IPR001608. Ala_racemase_N.
IPR020622. Ala_racemase_pyridoxalP-BS.
IPR029066. PLP-binding_barrel.
[Graphical view]
PfamiPF00842. Ala_racemase_C. 1 hit.
PF01168. Ala_racemase_N. 1 hit.
[Graphical view]
PRINTSiPR00992. ALARACEMASE.
SMARTiSM01005. Ala_racemase_C. 1 hit.
[Graphical view]
SUPFAMiSSF50621. SSF50621. 1 hit.
SSF51419. SSF51419. 1 hit.
TIGRFAMsiTIGR00492. alr. 1 hit.
PROSITEiPS00395. ALANINE_RACEMASE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q6LM08-1 [UniParc]FASTAAdd to Basket

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MKLKLSLVAL ALMGQTTANA APLLVDFDNN EREERVQSSN AWLEIDTQAF    50
SGNIQLLQNQ LKADTKICAI MKADAYGNGI AGLMPSIIAN QVPCVGITSN 100
EEARVVRKHG FIGKIMRVRA ASKNEIEGGL QYQMEELIGT KAQADQIIEI 150
ARANGTTIPV HLALNTSGMG RNGLDLTTYE GQVEGVEIAG DPNLEIVGMM 200
THFPNEGLDE IKRKVKRFKV ETKWLMDSTD LKRKDVTLHV ANSYITLNLP 250
EAHLDMVRPG GMLYGDYPAT APYQRIVSFK THVASLHHFP AGSTIGYGST 300
AVLERDSVLA NLPIGYSDGF ARSLGNKAEV LINGQRARVM GMVSMNTTMV 350
DVTDIVDVQT NEEVVIFGRQ GFEEITGEET EEKSNRILPE HYTVWGATNP 400
RIYR 404
Length:404
Mass (Da):44,408
Last modified:July 5, 2004 - v1
Checksum:iBC0E50D155592F87
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CR378673 Genomic DNA. Translation: CAG21670.1.
RefSeqiYP_131472.1. NC_006370.1.

Genome annotation databases

EnsemblBacteriaiCAG21670; CAG21670; PBPRA3385.
GeneIDi3125459.
KEGGippr:PBPRA3385.
PATRICi22937837. VBIPhoPro109272_3514.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CR378673 Genomic DNA. Translation: CAG21670.1 .
RefSeqi YP_131472.1. NC_006370.1.

3D structure databases

ProteinModelPortali Q6LM08.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 298386.PBPRA3385.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CAG21670 ; CAG21670 ; PBPRA3385 .
GeneIDi 3125459.
KEGGi ppr:PBPRA3385.
PATRICi 22937837. VBIPhoPro109272_3514.

Phylogenomic databases

HOGENOMi HOG000279190.
KOi K01775.
OMAi HVANSYI.
OrthoDBi EOG6PP9NJ.

Enzyme and pathway databases

UniPathwayi UPA00042 ; UER00497 .
BioCyci PPRO298386-WGS:GSSB-3378-MONOMER.

Family and domain databases

Gene3Di 2.40.37.10. 1 hit.
3.20.20.10. 1 hit.
HAMAPi MF_01201. Ala_racemase.
InterProi IPR000821. Ala_racemase.
IPR009006. Ala_racemase/Decarboxylase_C.
IPR011079. Ala_racemase_C.
IPR001608. Ala_racemase_N.
IPR020622. Ala_racemase_pyridoxalP-BS.
IPR029066. PLP-binding_barrel.
[Graphical view ]
Pfami PF00842. Ala_racemase_C. 1 hit.
PF01168. Ala_racemase_N. 1 hit.
[Graphical view ]
PRINTSi PR00992. ALARACEMASE.
SMARTi SM01005. Ala_racemase_C. 1 hit.
[Graphical view ]
SUPFAMi SSF50621. SSF50621. 1 hit.
SSF51419. SSF51419. 1 hit.
TIGRFAMsi TIGR00492. alr. 1 hit.
PROSITEi PS00395. ALANINE_RACEMASE. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: SS9.

Entry informationi

Entry nameiQ6LM08_PHOPR
AccessioniPrimary (citable) accession number: Q6LM08
Entry historyi
Integrated into UniProtKB/TrEMBL: July 5, 2004
Last sequence update: July 5, 2004
Last modified: July 9, 2014
This is version 79 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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