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Protein

Purine nucleoside phosphorylase DeoD-type 2

Gene

deoD2

Organism
Photobacterium profundum (strain SS9)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Catalytic activityi

Purine nucleoside + phosphate = purine + alpha-D-ribose 1-phosphate.UniRule annotation
Purine deoxynucleoside + phosphate = purine + 2'-deoxy-alpha-D-ribose 1-phosphate.UniRule annotation

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Binding sitei5Purine nucleoside; shared with dimeric partnerBy similarity1
Binding sitei21Phosphate; via amide nitrogenBy similarity1
Binding sitei25PhosphateBy similarity1
Binding sitei44Phosphate; shared with dimeric partnerBy similarity1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionGlycosyltransferase, Transferase

Names & Taxonomyi

Protein namesi
Recommended name:
Purine nucleoside phosphorylase DeoD-type 2UniRule annotation (EC:2.4.2.1UniRule annotation)
Short name:
PNP 2UniRule annotation
Gene namesi
Name:deoD2UniRule annotation
Ordered Locus Names:PBPRB0062
OrganismiPhotobacterium profundum (strain SS9)
Taxonomic identifieri298386 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaePhotobacterium
Proteomesi
  • UP000000593 Componenti: Chromosome 2

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000631521 – 236Purine nucleoside phosphorylase DeoD-type 2Add BLAST236

Interactioni

Subunit structurei

Homohexamer.UniRule annotation

Protein-protein interaction databases

STRINGi298386.PBPRB0062

Structurei

3D structure databases

ProteinModelPortaliQ6LLA7
SMRiQ6LLA7
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni88 – 91Phosphate bindingBy similarity4
Regioni180 – 182Purine nucleoside bindingBy similarity3
Regioni204 – 205Purine nucleoside bindingBy similarity2

Sequence similaritiesi

Belongs to the PNP/UDP phosphorylase family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105D3A Bacteria
COG0813 LUCA
HOGENOMiHOG000274896
KOiK03784
OMAiCSIYVHE
OrthoDBiPOG091H02M1

Family and domain databases

HAMAPiMF_01627 Pur_nucleosid_phosp, 1 hit
InterProiView protein in InterPro
IPR004402 DeoD-type
IPR018016 Nucleoside_phosphorylase_CS
IPR000845 Nucleoside_phosphorylase_d
IPR035994 Nucleoside_phosphorylase_sf
PANTHERiPTHR43691:SF2 PTHR43691:SF2, 1 hit
PfamiView protein in Pfam
PF01048 PNP_UDP_1, 1 hit
SUPFAMiSSF53167 SSF53167, 1 hit
TIGRFAMsiTIGR00107 deoD, 1 hit
PROSITEiView protein in PROSITE
PS01232 PNP_UDP_1, 1 hit

Sequencei

Sequence statusi: Complete.

Q6LLA7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATPHINAEL GDFAETVLMP GDPLRAKFIA ENFLEDVKQV CDVRSMLGFT
60 70 80 90 100
GTYKGKRVSV MGHGMGIPSC SIYVHELIKD FGVKNIIRVG SCGAVHDDVK
110 120 130 140 150
LMDIIIGMGA STDSKVNRIR FNDHDFAAIA DFHLLETSVQ QARLQNVNVR
160 170 180 190 200
VGNIFSADLF YSPEEGLFDK MEKLGMLGID MEAAGIYGVA AELGAKALTI
210 220 230
LTVSDHIKRG EKLSSEDRQK SFGEMMNVAL ETAVNI
Length:236
Mass (Da):25,773
Last modified:July 5, 2004 - v1
Checksum:i9902D1386E68BFC7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CR378675 Genomic DNA Translation: CAG21935.1
RefSeqiWP_011220165.1, NC_006371.1

Genome annotation databases

EnsemblBacteriaiCAG21935; CAG21935; PBPRB0062
KEGGippr:PBPRB0062

Similar proteinsi

Entry informationi

Entry nameiDEOD2_PHOPR
AccessioniPrimary (citable) accession number: Q6LLA7
Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 10, 2006
Last sequence update: July 5, 2004
Last modified: May 23, 2018
This is version 83 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

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