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Q6LKA3 (Q6LKA3_PHOPR) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 64. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Alpha-amylase RuleBase RU361134

EC=3.2.1.1 RuleBase RU361134
Gene names
Name:VV20400 EMBL CAG22277.1
Ordered Locus Names:PBPRB0404 EMBL CAG22277.1
OrganismPhotobacterium profundum (Photobacterium sp. (strain SS9)) [Complete proteome] [HAMAP] EMBL CAG22277.1
Taxonomic identifier74109 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaePhotobacterium

Protein attributes

Sequence length474 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units. RuleBase RU361134

Sequence similarities

Belongs to the glycosyl hydrolase 13 family. RuleBase RU003615

Ontologies

Keywords
   Biological processCarbohydrate metabolism RuleBase RU361134
   Molecular functionGlycosidase RuleBase RU361134
Hydrolase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processcarbohydrate metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular_functioncatalytic activity

Inferred from electronic annotation. Source: InterPro

cation binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q6LKA3 [UniParc].

Last modified July 5, 2004. Version 1.
Checksum: 70615C9B6EAAF22A

FASTA47453,598
        10         20         30         40         50         60 
MTSLFNTEYA STLSAPSVAT NVILHAFDWP YSKVTESAKA IADSGYKAIL VSPPLKSFHS 

        70         80         90        100        110        120 
KDGTQWWQRY QPQDYRVIDN QLGNTNDFRK MAETLNLHDI DIYADIVFNH MANESHERND 

       130        140        150        160        170        180 
LNYPNSNIIS QYKDKREYFD SIKLFGDLSQ PLFTKDDFLS AFPIKDWKDP WQVQHGRISS 

       190        200        210        220        230        240 
GGSDPGLPTL KNNKNVVKKQ KLYLKALKKI GVKGFRIDAA KHMTLDHIQE LCDEDITEGM 

       250        260        270        280        290        300 
HIFGEIITDG GATKEEYELF LQPYLEKTTL GAYDFPLFHT VLDVFNKNAS MASLINPYSL 

       310        320        330        340        350        360 
GSALENQRAI TFAITHDIPN NDVFLDQVMS EENERLAYCY ILGRDGGVPL VYTDLDTSGI 

       370        380        390        400        410        420 
KSSRDKPRWC DAWNDPILAN MIHFHNIMHC QPMAIIEQTQ DLLVFSRGEH GVVAINKGKK 

       430        440        450        460        470 
AVSYELPIKY SQQNRTEINE IINMEGVKLL PPSLGSETGA ILQLPAQSCA MLVS 

« Hide

References

[1]"Life at depth: Photobacterium profundum genome sequence and expression analysis."
Vezzi A., Campanaro S., D'Angelo M., Simonato F., Vitulo N., Lauro F.M., Cestaro A., Malacrida G., Simionati B., Cannata N., Romualdi C., Bartlett D.H., Valle G.
Science 307:1459-1461(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: SS9.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CR378676 Genomic DNA. Translation: CAG22277.1.
RefSeqYP_132077.1. NC_006371.1.

3D structure databases

ProteinModelPortalQ6LKA3.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING298386.PBPRB0404.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAG22277; CAG22277; PBPRB0404.
GeneID3121878.
KEGGppr:PBPRB0404.
PATRIC22939202. VBIPhoPro109272_4169.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000274290.
KOK01176.
OMAWQRYQPQ.
OrthoDBEOG6RZB1B.

Family and domain databases

Gene3D3.20.20.80. 1 hit.
InterProIPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERPTHR10357. PTHR10357. 1 hit.
PfamPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PRINTSPR00110. ALPHAAMYLASE.
SUPFAMSSF51445. SSF51445. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ6LKA3_PHOPR
AccessionPrimary (citable) accession number: Q6LKA3
Entry history
Integrated into UniProtKB/TrEMBL: July 5, 2004
Last sequence update: July 5, 2004
Last modified: July 9, 2014
This is version 64 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)