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Protein

Alpha-amylase

Gene

VV20400

Organism
Photobacterium profundum (Photobacterium sp. (strain SS9))
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units.UniRule annotation

GO - Molecular functioni

  1. alpha-amylase activity Source: UniProtKB-EC
  2. cation binding Source: InterPro

GO - Biological processi

  1. carbohydrate metabolic process Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseUniRule annotation, Hydrolase

Keywords - Biological processi

Carbohydrate metabolismUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Alpha-amylaseUniRule annotation (EC:3.2.1.1UniRule annotation)
Gene namesi
Name:VV20400Imported
Ordered Locus Names:PBPRB0404Imported
OrganismiPhotobacterium profundum (Photobacterium sp. (strain SS9))Imported
Taxonomic identifieri74109 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaePhotobacterium
ProteomesiUP000000593: Chromosome 2

Interactioni

Protein-protein interaction databases

STRINGi298386.PBPRB0404.

Structurei

3D structure databases

ProteinModelPortaliQ6LKA3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyl hydrolase 13 family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000274290.
KOiK01176.
OMAiNEWLAYA.
OrthoDBiEOG6RZB1B.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PRINTSiPR00110. ALPHAAMYLASE.
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

Q6LKA3-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MTSLFNTEYA STLSAPSVAT NVILHAFDWP YSKVTESAKA IADSGYKAIL
60 70 80 90 100
VSPPLKSFHS KDGTQWWQRY QPQDYRVIDN QLGNTNDFRK MAETLNLHDI
110 120 130 140 150
DIYADIVFNH MANESHERND LNYPNSNIIS QYKDKREYFD SIKLFGDLSQ
160 170 180 190 200
PLFTKDDFLS AFPIKDWKDP WQVQHGRISS GGSDPGLPTL KNNKNVVKKQ
210 220 230 240 250
KLYLKALKKI GVKGFRIDAA KHMTLDHIQE LCDEDITEGM HIFGEIITDG
260 270 280 290 300
GATKEEYELF LQPYLEKTTL GAYDFPLFHT VLDVFNKNAS MASLINPYSL
310 320 330 340 350
GSALENQRAI TFAITHDIPN NDVFLDQVMS EENERLAYCY ILGRDGGVPL
360 370 380 390 400
VYTDLDTSGI KSSRDKPRWC DAWNDPILAN MIHFHNIMHC QPMAIIEQTQ
410 420 430 440 450
DLLVFSRGEH GVVAINKGKK AVSYELPIKY SQQNRTEINE IINMEGVKLL
460 470
PPSLGSETGA ILQLPAQSCA MLVS
Length:474
Mass (Da):53,598
Last modified:July 5, 2004 - v1
Checksum:i70615C9B6EAAF22A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CR378676 Genomic DNA. Translation: CAG22277.1.
RefSeqiYP_132077.1. NC_006371.1.

Genome annotation databases

EnsemblBacteriaiCAG22277; CAG22277; PBPRB0404.
GeneIDi3121878.
KEGGippr:PBPRB0404.
PATRICi22939202. VBIPhoPro109272_4169.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CR378676 Genomic DNA. Translation: CAG22277.1.
RefSeqiYP_132077.1. NC_006371.1.

3D structure databases

ProteinModelPortaliQ6LKA3.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi298386.PBPRB0404.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAG22277; CAG22277; PBPRB0404.
GeneIDi3121878.
KEGGippr:PBPRB0404.
PATRICi22939202. VBIPhoPro109272_4169.

Phylogenomic databases

HOGENOMiHOG000274290.
KOiK01176.
OMAiNEWLAYA.
OrthoDBiEOG6RZB1B.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PRINTSiPR00110. ALPHAAMYLASE.
SUPFAMiSSF51445. SSF51445. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: SS9Imported.

Entry informationi

Entry nameiQ6LKA3_PHOPR
AccessioniPrimary (citable) accession number: Q6LKA3
Entry historyi
Integrated into UniProtKB/TrEMBL: July 5, 2004
Last sequence update: July 5, 2004
Last modified: January 7, 2015
This is version 66 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.