Q6LDZ3 (Q6LDZ3_RAT) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Leukocyte common antigen EMBL AAA41513.1

Submitted name:
RCG46072, isoform CRA_e EMBL EDM09647.1

Gene names

Name:	Ptprc RGD 3451
Synonyms:	L-CA EMBL AAA41513.1
ORF Names:	rCG_46072 EMBL EDM09647.1

Organism

Rattus norvegicus (Rat) EMBL AAA41513.1

Taxonomic identifier

10116 [NCBI]

Taxonomic lineage

Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length	962 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Catalytic activity

Protein tyrosine phosphate + H2O = protein tyrosine + phosphate. SAAS SAAS016130

Ontologies

Keywords
Molecular function	Hydrolase Protein phosphatase SAAS SAAS016130
Gene Ontology (GO)
None. [Check GOA]

Sequences

	Sequence		Length	Mass (Da)
	Q6LDZ3 [UniParc]. Last modified July 5, 2004. Version 1. Checksum: D2E6B7F23D29CC92	FASTA	962	109,934
	10 20 30 40 50 60 MKTFALDKHG TLWLHNLTVR TNYTCAAEVL YNNVILLKQD RRVQTDFGTP EMLPHVQCKN 70 80 90 100 110 120 STNSTTLVSW AEPASKHHGY ILCYKKTPSE KCENLANDVN SFEVKNLRPY TEYTVSLFAY 130 140 150 160 170 180 VIGRVQRNGP AKDCNFRTKA ARPGKVNGMK TSRASDNSIN VTCNSPYEIN GPEARYILEV 190 200 210 220 230 240 KSGGSLVKTF NQSTCKFVVD NLYYSTDYEF LVYFYNGEYL GDPEIKPQST SYNSKALIIF 250 260 270 280 290 300 LVFLIIVTSI ALLVVLYKIY DLRKKRSSNL DEQQELVERD EEKQLINVDP IHSDLLLETY 310 320 330 340 350 360 KRKIADEGRL FLAEFQSIPR VFSKFPIKDA RKSQNQNKNR YVDILPYDYN RVELSEINGD 370 380 390 400 410 420 AGSTYINASY IDGFKEPRKY IAAQGPRDET VDDFWKMIWE QKATVIVMVT RCEEGNRNKC 430 440 450 460 470 480 AEYWPCMEEG TRTFRDVVVT INDHKRCPDY IIQKLSIAHK KEKATGREVT HIQFTSWPDH 490 500 510 520 530 540 GVPEDPHLLL KLRRRVNAFS NFFSGPIVVH CSAGVGRTGT YIGIDAMLES LEAEGKVDVY 550 560 570 580 590 600 GYVVNLRRQR CLMVQVEAQY ILIHQALVEY NQFGETEVNL SELHSCLQNL KKRDPPSDPS 610 620 630 640 650 660 PLEAEYQRLP SYRSWRTQHI GNQEENKKKN RSSNVVPYDF NRVPLKHELE MSKESEAESD 670 680 690 700 710 720 ESSDEDSDSE ETSKYINASF VMSYWKPEMM IAAQGPLKET IGDFWQMIFQ RKVKVIVMLT 730 740 750 760 770 780 ELMSGDQEVC AQYWGEGKQT YGDMEVMLKD TNKSSAYILR AFELRHSKRK EPRTVYQYQC 790 800 810 820 830 840 TTWKGEELPA EPKDLVTLIQ NIKQKLPKSG SEGMKYHKHA SILVHCRDGS QQTGLFCALF 850 860 870 880 890 900 NLLESAETED VVDVFQVVKS LRKARPGMVG SFEQYQFLYD IMASIYPTQN GQVKKANSQD 910 920 930 940 950 960 KIEFHNEVDG AKQDANCVQP ADPLNKAQED SKEVGASEPA SGSEEPEHSA NGPMSPALTP SS

References

[1]	"Evidence from cDNA clones that the rat leukocyte-common antigen (T200) spans the lipid bilayer and contains a cytoplasmic domain of 80,000 Mr." Thomas M.L., Barclay A.N., Gagnon J., Williams A.F. Cell 41:83-93(1985) [PubMed: 3158393] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: Sprague-Dawley EMBL AAA41513.1.
[2]	"Gene and alternative splicing annotation with AIR." Florea L., Di Francesco V., Miller J., Turner R., Yao A., Harris M., Walenz B., Mobarry C., Merkulov G.V., Charlab R., Dew I., Deng Z., Istrail S., Li P., Sutton G. Genome Res. 15:54-66(2005) [PubMed: 15632090] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: BN EMBL EDM09647.1.
[3]	Mural R.J., Li P.W., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S.H., Dew I., Evans C.A., Ferriera S., Flanigan M., Fosler C., Glodek A., Gu Z., Holt R.A., Jennings D., Kraft C.L., Lu F. , Nguyen T., Nusskern D.R., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Wang Z., Woodage T., Zheng X.H., Zhong F. Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: BN EMBL EDM09647.1.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	M10072 mRNA. Translation: AAA41513.1. CH473958 Genomic DNA. Translation: EDM09647.1.
IPI	IPI00777870.
RefSeq	NP_001103357.1. NM_001109887.1. NP_001103358.1. NM_001109888.1. NP_001103359.1. NM_001109889.1. NP_001103360.1. NM_001109890.1. NP_612516.2. NM_138507.2.
UniGene	Rn.90166.
3D structure databases
HSSP	HSSP built from PDB template 1A5Y based on UniProtKB P18031.
ProteinModelPortal	Q6LDZ3.
SMR	Q6LDZ3. Positions 283-887.
ModBase	Search...
Protein-protein interaction databases
STRING	Q6LDZ3.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	24699.
KEGG	rno:24699.
UCSC	NM_138507. rat.
Organism-specific databases
CTD	5788.
Phylogenomic databases
GeneTree	ENSGT00590000082937.
HOVERGEN	HBG000066.
InParanoid	Q6LDZ3.
PhylomeDB	Q6LDZ3.
Gene expression databases
ArrayExpress	Q6LDZ3.
Genevestigator	Q6LDZ3.
Family and domain databases
InterPro	IPR003961. Fibronectin_type3. IPR013783. Ig-like_fold. IPR000387. Tyr/Dual-specificity_Pase. IPR016130. Tyr_Pase_AS. IPR000242. Tyr_Pase_rcpt/non-rcpt. [Graphical view]
Gene3D	G3DSA:2.60.40.10. Ig-like_fold. 2 hits.
KO	K06478.
Pfam	PF00041. fn3. 1 hit. PF00102. Y_phosphatase. 2 hits. [Graphical view]
PRINTS	PR00700. PRTYPHPHTASE.
SMART	SM00060. FN3. 2 hits. SM00194. PTPc. 2 hits. [Graphical view]
SUPFAM	SSF49265. FN_III-like. 2 hits.
PROSITE	PS50853. FN3. 2 hits. PS00383. TYR_PHOSPHATASE_1. 1 hit. PS50056. TYR_PHOSPHATASE_2. 2 hits. PS50055. TYR_PHOSPHATASE_PTP. 2 hits. [Graphical view]
ProtoNet	Search...
Other
NextBio	604155.

Entry information

Entry name

Q6LDZ3_RAT

Accession

Primary (citable) accession number: Q6LDZ3

Entry history

Integrated into UniProtKB/TrEMBL:	July 5, 2004
Last sequence update:	July 5, 2004
Last modified:	November 16, 2011
This is version 67 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)