Q6LCR5 (Q6LCR5_RAT) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
DNA-directed RNA polymerase RuleBase RU004279
EC=2.7.7.6 RuleBase RU004279

Gene names

Name:	Polr1a RGD 620824
Synonyms:	Rpo1-4 RGD 620824

Organism

Rattus norvegicus (Rat) EMBL AAC99958.1

Taxonomic identifier

10116 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length	86 AA.
Sequence status	Fragment.
Protein existence	Evidence at transcript level

General annotation (Comments)

Catalytic activity	Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). RuleBase RU004279
Sequence similarities	Belongs to the RNA polymerase beta' chain family. RuleBase RU004279

Ontologies

Keywords
Biological process	Transcription
Cellular component	DNA-directed RNA polymerase RuleBase RU004279 EMBL AAC99958.1
Molecular function	Nucleotidyltransferase RuleBase RU004279 EMBL AAC99958.1 Transferase
Gene Ontology (GO)
Biological_process	transcription, DNA-dependent Inferred from electronic annotation. Source: InterPro
Cellular_component	DNA-directed RNA polymerase I complex Inferred from electronic annotation. Source: Compara
Molecular_function	DNA binding Inferred from electronic annotation. Source: InterPro DNA-directed RNA polymerase activity Inferred from electronic annotation. Source: UniProtKB-KW zinc ion binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Experimental info
	Non-terminal residue	1	1	EMBL AAC99958.1
	Non-terminal residue	86	1	EMBL AAC99958.1

Sequences

	Sequence		Length	Mass (Da)
	Q6LCR5 [UniParc]. Last modified July 5, 2004. Version 1. Checksum: 1FBC864CE073E33B	FASTA	86	9,655
	10 20 30 40 50 60 AHFPQSELGR AEAYVLACTD QQYLVPKDGQ PLAGLIQDHM VSGANMTIRG CFFTREQYME 70 80 LVYRGLTDKV GRVKLFPPAI LKPFPL

References

[1]	Wang D., Stetler D.A. Submitted (AUG-1995) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Tissue: Liver EMBL AAC99958.1.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	U33459 mRNA. Translation: AAC99958.1.
IPI	IPI00389616.
UniGene	Rn.24877.
3D structure databases
ProteinModelPortal	Q6LCR5.
ModBase	Search...
Protein-protein interaction databases
STRING	Q6LCR5.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Organism-specific databases
RGD	620824. Polr1a.
Phylogenomic databases
HOGENOM	HOG000205401.
InParanoid	Q6LCR5.
Gene expression databases
ArrayExpress	Q6LCR5.
Genevestigator	Q6LCR5.
Family and domain databases
InterPro	IPR015699. DNA-dir_RNA_pol1_lsu. IPR007066. RNA_pol_Rpb1_3. [Graphical view]
PANTHER	PTHR19376:SF11. PTHR19376:SF11. 1 hit.
Pfam	PF04983. RNA_pol_Rpb1_3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q6LCR5_RAT

Accession

Primary (citable) accession number: Q6LCR5

Entry history

Integrated into UniProtKB/TrEMBL:	July 5, 2004
Last sequence update:	July 5, 2004
Last modified:	October 3, 2012
This is version 49 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)