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Protein
Submitted name:

DNA-directed RNA polymerase I, largest subunit

Gene

Polr1a

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

NucleotidyltransferaseImported, Transferase

Keywords - Biological processi

Transcription

Names & Taxonomyi

Protein namesi
Submitted name:
DNA-directed RNA polymerase I, largest subunitImported (EC:2.7.7.6Imported)
Gene namesi
Name:Polr1aImported
Synonyms:Rpo1-4Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Organism-specific databases

RGDi620824. Polr1a.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

DNA-directed RNA polymeraseImported

PTM / Processingi

Proteomic databases

PaxDbiQ6LCR5.

Expressioni

Gene expression databases

BgeeiENSRNOG00000009545.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000013587.

Structurei

3D structure databases

ProteinModelPortaliQ6LCR5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini22 – 83RNA_pol_Rpb1_3InterPro annotationAdd BLAST62

Phylogenomic databases

eggNOGiKOG0262. Eukaryota.
COG0086. LUCA.
HOGENOMiHOG000205401.

Family and domain databases

InterProiIPR015699. DNA-dir_RNA_pol1_lsu.
IPR007066. RNA_pol_Rpb1_3.
[Graphical view]
PANTHERiPTHR19376:SF11. PTHR19376:SF11. 1 hit.
PfamiPF04983. RNA_pol_Rpb1_3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

Q6LCR5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
AHFPQSELGR AEAYVLACTD QQYLVPKDGQ PLAGLIQDHM VSGANMTIRG
60 70 80
CFFTREQYME LVYRGLTDKV GRVKLFPPAI LKPFPL
Length:86
Mass (Da):9,655
Last modified:July 5, 2004 - v1
Checksum:i1FBC864CE073E33B
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-terminal residuei1Imported1
Non-terminal residuei86Imported1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U33459 mRNA. Translation: AAC99958.1.
UniGeneiRn.24877.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U33459 mRNA. Translation: AAC99958.1.
UniGeneiRn.24877.

3D structure databases

ProteinModelPortaliQ6LCR5.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000013587.

Proteomic databases

PaxDbiQ6LCR5.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Organism-specific databases

RGDi620824. Polr1a.

Phylogenomic databases

eggNOGiKOG0262. Eukaryota.
COG0086. LUCA.
HOGENOMiHOG000205401.

Gene expression databases

BgeeiENSRNOG00000009545.

Family and domain databases

InterProiIPR015699. DNA-dir_RNA_pol1_lsu.
IPR007066. RNA_pol_Rpb1_3.
[Graphical view]
PANTHERiPTHR19376:SF11. PTHR19376:SF11. 1 hit.
PfamiPF04983. RNA_pol_Rpb1_3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ6LCR5_RAT
AccessioniPrimary (citable) accession number: Q6LCR5
Entry historyi
Integrated into UniProtKB/TrEMBL: July 5, 2004
Last sequence update: July 5, 2004
Last modified: September 7, 2016
This is version 68 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.