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Protein

Uncharacterized WD repeat-containing protein C3H5.08c

Gene

SPAC3H5.08c

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized WD repeat-containing protein C3H5.08c
Gene namesi
ORF Names:SPAC3H5.08c
OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Taxonomic identifieri284812 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
Proteomesi
  • UP000002485 Componenti: Chromosome I

Organism-specific databases

EuPathDBiFungiDB:SPAC3H5.08c.
PomBaseiSPAC3H5.08c.

Subcellular locationi

GO - Cellular componenti

  • endoplasmic reticulum membrane Source: PomBase
  • mitotic spindle pole body Source: PomBase
  • nucleus Source: PomBase
  • protein complex Source: PomBase
Complete GO annotation...

Keywords - Cellular componenti

Endoplasmic reticulum, Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 933933Uncharacterized WD repeat-containing protein C3H5.08cPRO_0000316557Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei722 – 7221Phosphoserine1 Publication

Keywords - PTMi

Phosphoprotein

Proteomic databases

MaxQBiQ6LA54.

PTM databases

iPTMnetiQ6LA54.

Interactioni

Protein-protein interaction databases

BioGridi280055. 39 interactions.
MINTiMINT-4700513.

Structurei

3D structure databases

ProteinModelPortaliQ6LA54.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati314 – 35340WD 1Add
BLAST
Repeati385 – 42339WD 2Add
BLAST
Repeati425 – 46541WD 3Add
BLAST
Repeati467 – 50640WD 4Add
BLAST
Repeati517 – 56347WD 5Add
BLAST
Repeati568 – 60740WD 6Add
BLAST
Repeati617 – 65741WD 7Add
BLAST
Repeati665 – 71046WD 8Add
BLAST

Sequence similaritiesi

Contains 8 WD repeats.PROSITE-ProRule annotation

Keywords - Domaini

Repeat, WD repeat

Phylogenomic databases

InParanoidiQ6LA54.
KOiK20241.
OrthoDBiEOG092C2ZIU.

Family and domain databases

Gene3Di2.130.10.10. 2 hits.
InterProiIPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR017986. WD40_repeat_dom.
[Graphical view]
PfamiPF00400. WD40. 4 hits.
[Graphical view]
SMARTiSM00320. WD40. 6 hits.
[Graphical view]
SUPFAMiSSF50978. SSF50978. 3 hits.
PROSITEiPS50082. WD_REPEATS_2. 4 hits.
PS50294. WD_REPEATS_REGION. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q6LA54-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNGNLPHIQI QSPKNSLDHL NNGRQATHNF EHGKPGDREE ANGHADAHSS
60 70 80 90 100
SGRSRYLSSD TNLLRDGSSS LDPLSKHIMK RTRSEKTLSF LNPSRASSNT
110 120 130 140 150
HLSREGTNRS SNVTRTVSGR KSNHGSSLTD TGESDQLSLK SFGAIRQPSQ
160 170 180 190 200
HRSSLFSRML GSTSHIFGIR EDMDNESSEE ERDGIPRVEG NAADPFSWIP
210 220 230 240 250
DGKNVWDSPP KYIRVLSHNK KEKSLDHLFL AQELYCKPTL AATHDRYYEP
260 270 280 290 300
RATDFPNLAH ESSEPSSSRH TADAQSITNA SVHLHNSSSP LNRTPSVISD
310 320 330 340 350
TLAVAITSNS SSNSSNNAIW AMKFSRDGRY LAVGGQDRIL RIWAVLDSEH
360 370 380 390 400
ARSVASETCS SDPNNPKLNL KAPVFSEAPI REYAGHTADI LDLSWSRNNF
410 420 430 440 450
LLSSSMDKTA RLWHPVRKDC LCCFEHSDFV TSIAFHPKDD RFFLSGSLDC
460 470 480 490 500
KLRLWSIKEK AVSFWNELPE LITAVAFSPD GGLAIAGTFV GLCLFYDTRG
510 520 530 540 550
LRFRTQMSIR SSRGKNAKGS KVTGIQTRTQ MIDNIAGDTE MLVTTNDSRI
560 570 580 590 600
RIYNLRDKSL ELKFKGHANA QSQNRAYFDD DGNYVICGSE DHQVFIWDLP
610 620 630 640 650
PQHMHKTKKK KHEHFKASVR PITAAVFAPT KTKQLLTLSG DPVYLAAISA
660 670 680 690 700
RRSSVISNAS IETGPSLRNL KSLSHSYLPI EIMKGHIIVC GDLDGRIRVF
710 720 730 740 750
RQDSVFAARK LIEKKNIERK NSETLSNSSF FPQALKAHMN SISSPKRHFS
760 770 780 790 800
LRHKKNASQI TNNENNGNDD IKKGDEPEEE HVGLRKNSTQ EKNANLDPNE
810 820 830 840 850
ALKRADMMML QEGASSMVYY SLTNLDNPGA TVNEAAKTAA TIEQNEHEIQ
860 870 880 890 900
TSVDPISNVK AILPNADDVS SKNSSTEDQL ECLRCGNSLF NVFSRSFVFE
910 920 930
GAKFSIVCSH CNRKLLKSGS DDGSETHEMS TLP
Length:933
Mass (Da):103,688
Last modified:April 18, 2012 - v2
Checksum:i6AB56486C097D65E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329670 Genomic DNA. Translation: CAB16599.2.
PIRiT38754.
RefSeqiNP_594184.2. NM_001019608.2.

Genome annotation databases

EnsemblFungiiSPAC3H5.08c.1; SPAC3H5.08c.1:pep; SPAC3H5.08c.
GeneIDi2543641.
KEGGispo:SPAC3H5.08c.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329670 Genomic DNA. Translation: CAB16599.2.
PIRiT38754.
RefSeqiNP_594184.2. NM_001019608.2.

3D structure databases

ProteinModelPortaliQ6LA54.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi280055. 39 interactions.
MINTiMINT-4700513.

PTM databases

iPTMnetiQ6LA54.

Proteomic databases

MaxQBiQ6LA54.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiSPAC3H5.08c.1; SPAC3H5.08c.1:pep; SPAC3H5.08c.
GeneIDi2543641.
KEGGispo:SPAC3H5.08c.

Organism-specific databases

EuPathDBiFungiDB:SPAC3H5.08c.
PomBaseiSPAC3H5.08c.

Phylogenomic databases

InParanoidiQ6LA54.
KOiK20241.
OrthoDBiEOG092C2ZIU.

Miscellaneous databases

PROiQ6LA54.

Family and domain databases

Gene3Di2.130.10.10. 2 hits.
InterProiIPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR017986. WD40_repeat_dom.
[Graphical view]
PfamiPF00400. WD40. 4 hits.
[Graphical view]
SMARTiSM00320. WD40. 6 hits.
[Graphical view]
SUPFAMiSSF50978. SSF50978. 3 hits.
PROSITEiPS50082. WD_REPEATS_2. 4 hits.
PS50294. WD_REPEATS_REGION. 2 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYF48_SCHPO
AccessioniPrimary (citable) accession number: Q6LA54
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 5, 2008
Last sequence update: April 18, 2012
Last modified: September 7, 2016
This is version 103 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Schizosaccharomyces pombe
    Schizosaccharomyces pombe: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.