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Protein

Uncharacterized WD repeat-containing protein C3H5.08c

Gene

SPAC3H5.08c

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized WD repeat-containing protein C3H5.08c
Gene namesi
ORF Names:SPAC3H5.08c
OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Taxonomic identifieri284812 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
Proteomesi
  • UP000002485 Componenti: Chromosome I

Organism-specific databases

EuPathDBiFungiDB:SPAC3H5.08c
PomBaseiSPAC3H5.08c

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Endoplasmic reticulum, Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003165571 – 933Uncharacterized WD repeat-containing protein C3H5.08cAdd BLAST933

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei722Phosphoserine1 Publication1

Keywords - PTMi

Phosphoprotein

Proteomic databases

MaxQBiQ6LA54
PaxDbiQ6LA54
PRIDEiQ6LA54

PTM databases

iPTMnetiQ6LA54

Interactioni

Protein-protein interaction databases

BioGridi280055, 39 interactors
STRINGi4896.SPAC3H5.08c.1

Structurei

3D structure databases

ProteinModelPortaliQ6LA54
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati314 – 353WD 1Add BLAST40
Repeati385 – 423WD 2Add BLAST39
Repeati425 – 465WD 3Add BLAST41
Repeati467 – 506WD 4Add BLAST40
Repeati517 – 563WD 5Add BLAST47
Repeati568 – 607WD 6Add BLAST40
Repeati617 – 657WD 7Add BLAST41
Repeati665 – 710WD 8Add BLAST46

Keywords - Domaini

Repeat, WD repeat

Phylogenomic databases

InParanoidiQ6LA54
KOiK20241
OrthoDBiEOG092C2ZIU

Family and domain databases

Gene3Di2.130.10.10, 1 hit
InterProiView protein in InterPro
IPR015943 WD40/YVTN_repeat-like_dom_sf
IPR001680 WD40_repeat
IPR017986 WD40_repeat_dom
IPR036322 WD40_repeat_dom_sf
PfamiView protein in Pfam
PF00400 WD40, 4 hits
SMARTiView protein in SMART
SM00320 WD40, 6 hits
SUPFAMiSSF50978 SSF50978, 3 hits
PROSITEiView protein in PROSITE
PS50082 WD_REPEATS_2, 4 hits
PS50294 WD_REPEATS_REGION, 2 hits

Sequencei

Sequence statusi: Complete.

Q6LA54-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNGNLPHIQI QSPKNSLDHL NNGRQATHNF EHGKPGDREE ANGHADAHSS
60 70 80 90 100
SGRSRYLSSD TNLLRDGSSS LDPLSKHIMK RTRSEKTLSF LNPSRASSNT
110 120 130 140 150
HLSREGTNRS SNVTRTVSGR KSNHGSSLTD TGESDQLSLK SFGAIRQPSQ
160 170 180 190 200
HRSSLFSRML GSTSHIFGIR EDMDNESSEE ERDGIPRVEG NAADPFSWIP
210 220 230 240 250
DGKNVWDSPP KYIRVLSHNK KEKSLDHLFL AQELYCKPTL AATHDRYYEP
260 270 280 290 300
RATDFPNLAH ESSEPSSSRH TADAQSITNA SVHLHNSSSP LNRTPSVISD
310 320 330 340 350
TLAVAITSNS SSNSSNNAIW AMKFSRDGRY LAVGGQDRIL RIWAVLDSEH
360 370 380 390 400
ARSVASETCS SDPNNPKLNL KAPVFSEAPI REYAGHTADI LDLSWSRNNF
410 420 430 440 450
LLSSSMDKTA RLWHPVRKDC LCCFEHSDFV TSIAFHPKDD RFFLSGSLDC
460 470 480 490 500
KLRLWSIKEK AVSFWNELPE LITAVAFSPD GGLAIAGTFV GLCLFYDTRG
510 520 530 540 550
LRFRTQMSIR SSRGKNAKGS KVTGIQTRTQ MIDNIAGDTE MLVTTNDSRI
560 570 580 590 600
RIYNLRDKSL ELKFKGHANA QSQNRAYFDD DGNYVICGSE DHQVFIWDLP
610 620 630 640 650
PQHMHKTKKK KHEHFKASVR PITAAVFAPT KTKQLLTLSG DPVYLAAISA
660 670 680 690 700
RRSSVISNAS IETGPSLRNL KSLSHSYLPI EIMKGHIIVC GDLDGRIRVF
710 720 730 740 750
RQDSVFAARK LIEKKNIERK NSETLSNSSF FPQALKAHMN SISSPKRHFS
760 770 780 790 800
LRHKKNASQI TNNENNGNDD IKKGDEPEEE HVGLRKNSTQ EKNANLDPNE
810 820 830 840 850
ALKRADMMML QEGASSMVYY SLTNLDNPGA TVNEAAKTAA TIEQNEHEIQ
860 870 880 890 900
TSVDPISNVK AILPNADDVS SKNSSTEDQL ECLRCGNSLF NVFSRSFVFE
910 920 930
GAKFSIVCSH CNRKLLKSGS DDGSETHEMS TLP
Length:933
Mass (Da):103,688
Last modified:April 18, 2012 - v2
Checksum:i6AB56486C097D65E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329670 Genomic DNA Translation: CAB16599.2
PIRiT38754
RefSeqiNP_594184.2, NM_001019608.2

Genome annotation databases

EnsemblFungiiSPAC3H5.08c.1; SPAC3H5.08c.1:pep; SPAC3H5.08c
GeneIDi2543641
KEGGispo:SPAC3H5.08c

Similar proteinsi

Entry informationi

Entry nameiYF48_SCHPO
AccessioniPrimary (citable) accession number: Q6LA54
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 5, 2008
Last sequence update: April 18, 2012
Last modified: April 25, 2018
This is version 112 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Schizosaccharomyces pombe
    Schizosaccharomyces pombe: entries and gene names

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