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Q6L5C4

- P2C52_ORYSJ

UniProt

Q6L5C4 - P2C52_ORYSJ

Protein

Probable protein phosphatase 2C 52

Gene

Os05g0587100

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 76 (01 Oct 2014)
      Sequence version 1 (05 Jul 2004)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    [a protein]-serine/threonine phosphate + H2O = [a protein]-serine/threonine + phosphate.

    Cofactori

    Binds 2 magnesium or manganese ions per subunit.By similarity

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Metal bindingi265 – 2651Manganese 1By similarity
    Metal bindingi265 – 2651Manganese 2By similarity
    Metal bindingi266 – 2661Manganese 1; via carbonyl oxygenBy similarity
    Metal bindingi427 – 4271Manganese 2By similarity
    Metal bindingi466 – 4661Manganese 2By similarity

    GO - Molecular functioni

    1. metal ion binding Source: UniProtKB-KW
    2. protein serine/threonine phosphatase activity Source: InterPro

    GO - Biological processi

    1. protein dephosphorylation Source: InterPro

    Keywords - Molecular functioni

    Hydrolase, Protein phosphatase

    Keywords - Ligandi

    Magnesium, Manganese, Metal-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Probable protein phosphatase 2C 52 (EC:3.1.3.16)
    Short name:
    OsPP2C52
    Gene namesi
    Ordered Locus Names:Os05g0587100, LOC_Os05g50970
    ORF Names:OJ1007_H05.6, OsJ_000225
    OrganismiOryza sativa subsp. japonica (Rice)
    Taxonomic identifieri39947 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
    ProteomesiUP000000763: Chromosome 5

    Organism-specific databases

    GrameneiQ6L5C4.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 491491Probable protein phosphatase 2C 52PRO_0000363299Add
    BLAST

    Structurei

    3D structure databases

    ProteinModelPortaliQ6L5C4.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini228 – 468241PP2C-likeAdd
    BLAST

    Compositional bias

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Compositional biasi14 – 5138Ala-richAdd
    BLAST
    Compositional biasi94 – 213120Glu-richAdd
    BLAST

    Sequence similaritiesi

    Belongs to the PP2C family.Curated
    Contains 1 PP2C-like domain.Curated

    Phylogenomic databases

    eggNOGiCOG0631.
    HOGENOMiHOG000233896.
    KOiK17506.
    OMAiTHRDDGS.

    Family and domain databases

    Gene3Di3.60.40.10. 1 hit.
    InterProiIPR001932. PP2C-like_dom.
    IPR000222. PP2C_Mn2_Asp60_BS.
    IPR015655. Protein_Pase_2C.
    [Graphical view]
    PANTHERiPTHR13832. PTHR13832. 1 hit.
    PfamiPF00481. PP2C. 1 hit.
    [Graphical view]
    SMARTiSM00331. PP2C_SIG. 1 hit.
    SM00332. PP2Cc. 1 hit.
    [Graphical view]
    SUPFAMiSSF81606. SSF81606. 1 hit.
    PROSITEiPS01032. PP2C. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q6L5C4-1 [UniParc]FASTAAdd to Basket

    « Hide

    MVYDGAVKDQ ESSANPASAS AALSEASAAA SEVTAAAAAG AGAGAAEEGA    50
    AVSGRPPRPP HDKRLGVRHP LKHRRFRAGG KVMVEPGDPP SAQEVADEEA 100
    SEVEQEAAPV EREPPQEEGG DVEVSSAPAE MEVVEGDAME VSPEPAVAVG 150
    ESELEGRPGE EEEVSSPVVS QGERKQETAA AAPVPAVEEK KHKDQENKHK 200
    EREREKERER VDEVGYMSGG WKSEDGFLSC GYSSFRGKRA SMEDFYDIKS 250
    SKIDDKQISL FGIFDGHGGS RAAEYLKEHL FENLMKHPEF MTNTKLAISE 300
    TYKKTDSEFL DSESHTHRDD GSTASTAVLV GNHLYVANVG DSRAVISKAG 350
    KAIALSEDHK PNRSDERKRI ESAGGVVMWA GTWRVGGVLA MSRAFGNRLL 400
    KQFVVADPEI QEQEIDDELE FLILASDGLW DVVPNEDAVS LVKIEEEPEA 450
    AARKLTETAF SRGSGDNITC IVVKFQHDKM DGDSSPTSDK S 491
    Length:491
    Mass (Da):52,919
    Last modified:July 5, 2004 - v1
    Checksum:i5FBEA073B5D07327
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC098598 Genomic DNA. Translation: AAT44157.1.
    AP008211 Genomic DNA. Translation: BAF18381.1.
    CM000138 Genomic DNA. Translation: EAZ10400.1.
    AK101645 mRNA. Translation: BAG95168.1.
    RefSeqiNP_001056467.1. NM_001063002.1.
    UniGeneiOs.5928.

    Genome annotation databases

    EnsemblPlantsiOS05T0587100-01; OS05T0587100-01; OS05G0587100.
    GeneIDi4339763.
    KEGGiosa:4339763.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC098598 Genomic DNA. Translation: AAT44157.1 .
    AP008211 Genomic DNA. Translation: BAF18381.1 .
    CM000138 Genomic DNA. Translation: EAZ10400.1 .
    AK101645 mRNA. Translation: BAG95168.1 .
    RefSeqi NP_001056467.1. NM_001063002.1.
    UniGenei Os.5928.

    3D structure databases

    ProteinModelPortali Q6L5C4.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi OS05T0587100-01 ; OS05T0587100-01 ; OS05G0587100 .
    GeneIDi 4339763.
    KEGGi osa:4339763.

    Organism-specific databases

    Gramenei Q6L5C4.

    Phylogenomic databases

    eggNOGi COG0631.
    HOGENOMi HOG000233896.
    KOi K17506.
    OMAi THRDDGS.

    Family and domain databases

    Gene3Di 3.60.40.10. 1 hit.
    InterProi IPR001932. PP2C-like_dom.
    IPR000222. PP2C_Mn2_Asp60_BS.
    IPR015655. Protein_Pase_2C.
    [Graphical view ]
    PANTHERi PTHR13832. PTHR13832. 1 hit.
    Pfami PF00481. PP2C. 1 hit.
    [Graphical view ]
    SMARTi SM00331. PP2C_SIG. 1 hit.
    SM00332. PP2Cc. 1 hit.
    [Graphical view ]
    SUPFAMi SSF81606. SSF81606. 1 hit.
    PROSITEi PS01032. PP2C. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    3. "The rice annotation project database (RAP-DB): 2008 update."
      The rice annotation project (RAP)
      Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENOME REANNOTATION.
      Strain: cv. Nipponbare.
    4. "The genomes of Oryza sativa: a history of duplications."
      Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.
      , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.
      PLoS Biol. 3:266-281(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    5. "Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
      The rice full-length cDNA consortium
      Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: cv. Nipponbare.
    6. "Genome-wide and expression analysis of protein phosphatase 2C in rice and Arabidopsis."
      Xue T., Wang D., Zhang S., Ehlting J., Ni F., Jacab S., Zheng C., Zhong Y.
      BMC Genomics 9:550-550(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENE FAMILY, NOMENCLATURE.

    Entry informationi

    Entry nameiP2C52_ORYSJ
    AccessioniPrimary (citable) accession number: Q6L5C4
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: February 10, 2009
    Last sequence update: July 5, 2004
    Last modified: October 1, 2014
    This is version 76 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Oryza sativa (rice)
      Index of Oryza sativa entries and their corresponding gene designations
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3