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Q6L5C4 (P2C52_ORYSJ) Reviewed, UniProtKB/Swiss-Prot

Last modified April 16, 2014. Version 74. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Probable protein phosphatase 2C 52

Short name=OsPP2C52
EC=3.1.3.16
Gene names
Ordered Locus Names:Os05g0587100, LOC_Os05g50970
ORF Names:OJ1007_H05.6, OsJ_000225
OrganismOryza sativa subsp. japonica (Rice) [Reference proteome]
Taxonomic identifier39947 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza

Protein attributes

Sequence length491 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Catalytic activity

[a protein]-serine/threonine phosphate + H2O = [a protein]-serine/threonine + phosphate.

Cofactor

Binds 2 magnesium or manganese ions per subunit By similarity.

Sequence similarities

Belongs to the PP2C family.

Contains 1 PP2C-like domain.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 491491Probable protein phosphatase 2C 52
PRO_0000363299

Regions

Domain228 – 468241PP2C-like
Compositional bias14 – 5138Ala-rich
Compositional bias94 – 213120Glu-rich

Sites

Metal binding2651Manganese 1 By similarity
Metal binding2651Manganese 2 By similarity
Metal binding2661Manganese 1; via carbonyl oxygen By similarity
Metal binding4271Manganese 2 By similarity
Metal binding4661Manganese 2 By similarity

Sequences

Sequence LengthMass (Da)Tools
Q6L5C4 [UniParc].

Last modified July 5, 2004. Version 1.
Checksum: 5FBEA073B5D07327

FASTA49152,919
        10         20         30         40         50         60 
MVYDGAVKDQ ESSANPASAS AALSEASAAA SEVTAAAAAG AGAGAAEEGA AVSGRPPRPP 

        70         80         90        100        110        120 
HDKRLGVRHP LKHRRFRAGG KVMVEPGDPP SAQEVADEEA SEVEQEAAPV EREPPQEEGG 

       130        140        150        160        170        180 
DVEVSSAPAE MEVVEGDAME VSPEPAVAVG ESELEGRPGE EEEVSSPVVS QGERKQETAA 

       190        200        210        220        230        240 
AAPVPAVEEK KHKDQENKHK EREREKERER VDEVGYMSGG WKSEDGFLSC GYSSFRGKRA 

       250        260        270        280        290        300 
SMEDFYDIKS SKIDDKQISL FGIFDGHGGS RAAEYLKEHL FENLMKHPEF MTNTKLAISE 

       310        320        330        340        350        360 
TYKKTDSEFL DSESHTHRDD GSTASTAVLV GNHLYVANVG DSRAVISKAG KAIALSEDHK 

       370        380        390        400        410        420 
PNRSDERKRI ESAGGVVMWA GTWRVGGVLA MSRAFGNRLL KQFVVADPEI QEQEIDDELE 

       430        440        450        460        470        480 
FLILASDGLW DVVPNEDAVS LVKIEEEPEA AARKLTETAF SRGSGDNITC IVVKFQHDKM 

       490 
DGDSSPTSDK S 

« Hide

References

« Hide 'large scale' references
[1]"A fine physical map of the rice chromosome 5."
Cheng C.-H., Chung M.C., Liu S.-M., Chen S.-K., Kao F.Y., Lin S.-J., Hsiao S.-H., Tseng I.C., Hsing Y.-I.C., Wu H.-P., Chen C.-S., Shaw J.-F., Wu J., Matsumoto T., Sasaki T., Chen H.-C., Chow T.-Y.
Mol. Genet. Genomics 274:337-345(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nipponbare.
[2]"The map-based sequence of the rice genome."
International rice genome sequencing project (IRGSP)
Nature 436:793-800(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nipponbare.
[3]"The rice annotation project database (RAP-DB): 2008 update."
The rice annotation project (RAP)
Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: GENOME REANNOTATION.
Strain: cv. Nipponbare.
[4]"The genomes of Oryza sativa: a history of duplications."
Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L. expand/collapse author list , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.
PLoS Biol. 3:266-281(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nipponbare.
[5]"Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
The rice full-length cDNA consortium
Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: cv. Nipponbare.
[6]"Genome-wide and expression analysis of protein phosphatase 2C in rice and Arabidopsis."
Xue T., Wang D., Zhang S., Ehlting J., Ni F., Jacab S., Zheng C., Zhong Y.
BMC Genomics 9:550-550(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: GENE FAMILY, NOMENCLATURE.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AC098598 Genomic DNA. Translation: AAT44157.1.
AP008211 Genomic DNA. Translation: BAF18381.1.
CM000138 Genomic DNA. Translation: EAZ10400.1.
AK101645 mRNA. Translation: BAG95168.1.
RefSeqNP_001056467.1. NM_001063002.1.
UniGeneOs.5928.

3D structure databases

ProteinModelPortalQ6L5C4.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsOS05T0587100-01; OS05T0587100-01; OS05G0587100.
GeneID4339763.
KEGGosa:4339763.

Organism-specific databases

GrameneQ6L5C4.

Phylogenomic databases

eggNOGCOG0631.
HOGENOMHOG000233896.
KOK17506.
OMATHRDDGS.
ProtClustDBCLSN2695853.

Family and domain databases

Gene3D3.60.40.10. 1 hit.
InterProIPR001932. PP2C-like_dom.
IPR000222. PP2C_Mn2_Asp60_BS.
IPR015655. Protein_Pase_2C.
[Graphical view]
PANTHERPTHR13832. PTHR13832. 1 hit.
PfamPF00481. PP2C. 1 hit.
[Graphical view]
SMARTSM00331. PP2C_SIG. 1 hit.
SM00332. PP2Cc. 1 hit.
[Graphical view]
SUPFAMSSF81606. SSF81606. 1 hit.
PROSITEPS01032. PP2C. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameP2C52_ORYSJ
AccessionPrimary (citable) accession number: Q6L5C4
Entry history
Integrated into UniProtKB/Swiss-Prot: February 10, 2009
Last sequence update: July 5, 2004
Last modified: April 16, 2014
This is version 74 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Oryza sativa (rice)

Index of Oryza sativa entries and their corresponding gene designations