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Q6L4R7

- P2C53_ORYSJ

UniProt

Q6L4R7 - P2C53_ORYSJ

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Protein

Probable protein phosphatase 2C 53

Gene

Os05g0592800

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at transcript leveli

Functioni

Catalytic activityi

[a protein]-serine/threonine phosphate + H2O = [a protein]-serine/threonine + phosphate.

Cofactori

Binds 2 magnesium or manganese ions per subunit.By similarity

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi180 – 1801Manganese 1By similarity
Metal bindingi180 – 1801Manganese 2By similarity
Metal bindingi181 – 1811Manganese 1; via carbonyl oxygenBy similarity
Metal bindingi362 – 3621Manganese 2By similarity
Metal bindingi426 – 4261Manganese 2By similarity

GO - Molecular functioni

  1. metal ion binding Source: UniProtKB-KW
  2. protein serine/threonine phosphatase activity Source: InterPro

GO - Biological processi

  1. protein dephosphorylation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Hydrolase, Protein phosphatase

Keywords - Ligandi

Magnesium, Manganese, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Probable protein phosphatase 2C 53 (EC:3.1.3.16)
Short name:
OsPP2C53
Gene namesi
Ordered Locus Names:Os05g0592800, LOC_Os05g51510
ORF Names:OsJ_018965, P0663C08.11
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
ProteomesiUP000000763: Chromosome 5

Organism-specific databases

GrameneiQ6L4R7.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2929Sequence AnalysisAdd
BLAST
Chaini30 – 445416Probable protein phosphatase 2C 53PRO_0000363300Add
BLAST

Expressioni

Gene expression databases

ExpressionAtlasiQ6L4R7. baseline.

Structurei

3D structure databases

ProteinModelPortaliQ6L4R7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini123 – 428306PP2C-likeAdd
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi5 – 113109Ala-richAdd
BLAST

Sequence similaritiesi

Belongs to the PP2C family.Curated
Contains 1 PP2C-like domain.Curated

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiCOG0631.
InParanoidiQ6L4R7.
KOiK14497.
OMAiCFLKVDS.

Family and domain databases

Gene3Di3.60.40.10. 1 hit.
InterProiIPR001932. PP2C-like_dom.
IPR000222. PP2C_Mn2_Asp60_BS.
IPR015655. Protein_Pase_2C.
[Graphical view]
PANTHERiPTHR13832. PTHR13832. 1 hit.
PfamiPF00481. PP2C. 1 hit.
[Graphical view]
SMARTiSM00331. PP2C_SIG. 1 hit.
SM00332. PP2Cc. 1 hit.
[Graphical view]
SUPFAMiSSF81606. SSF81606. 1 hit.
PROSITEiPS01032. PP2C. 1 hit.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

This entry describes 2 isoformsi produced by alternative splicing. Align

Isoform 1 (identifier: Q6L4R7-1) [UniParc]FASTAAdd to Basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MEDLALPAAP PAPTLSFTLL AAAAAVAEAM EEALGAALPP LTAPVPAPGD
60 70 80 90 100
DSACGSPCSV ASDCSSVASA DFEGFAELGT SLLAGPAVLF DDLTAASVAV
110 120 130 140 150
AEAAEPRAVG ATARSVFAMD CVPLWGLESI CGRRPEMEDD YAVVPRFFDL
160 170 180 190 200
PLWMVAGDAA VDGLDRASFR LPAHFFAVYD GHGGVQVANY CRKRIHAVLT
210 220 230 240 250
EELRRAEDDA CGSDLSGLES KKLWEKAFVD CFSRVDAEVG GNAASGAPPV
260 270 280 290 300
APDTVGSTAV VAVVCSSHVI VANCGDSRAV LCRGKQPLPL SLDHKPNRED
310 320 330 340 350
EYARIEALGG KVIQWNGYRV LGVLAMSRSI GDKYLKPYII PVPEVTVVAR
360 370 380 390 400
AKDDDCLILA SDGLWDVMSN EEVCDAARKR ILLWHKKNAA TASTSSAQIS
410 420 430 440
GDSSDPAAQA AADYLSKLAL QKGSKDNITV VVIDLKAHRK FKSKA
Length:445
Mass (Da):46,684
Last modified:July 5, 2004 - v1
Checksum:iE06D4D4A57E97FC1
GO
Isoform 2 (identifier: Q6L4R7-2) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-144: Missing.
     145-186: PRFFDLPLWM...AVYDGHGGVQ → MPWSRDFSTF...PISSPSTMAT

Note: No experimental confirmation available.

Show »
Length:301
Mass (Da):32,306
Checksum:i3EB37EADBA7F3952
GO

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei1 – 144144Missing in isoform 2. 1 PublicationVSP_036273Add
BLAST
Alternative sequencei145 – 18642PRFFD…HGGVQ → MPWSRDFSTFLCGWLPATRQ STASTGPPSAFQPISSPSTM AT in isoform 2. 1 PublicationVSP_036274Add
BLAST

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AC130728 Genomic DNA. Translation: AAT44303.1.
AP008211 Genomic DNA. Translation: BAF18412.1.
CM000142 Genomic DNA. Translation: EAZ35482.1.
AK067627 mRNA. Translation: BAG90506.1.
AK070388 mRNA. Translation: BAG91921.1.
RefSeqiNP_001056498.1. NM_001063033.1. [Q6L4R7-1]
UniGeneiOs.52518.

Genome annotation databases

EnsemblPlantsiOS05T0592800-02; OS05T0592800-02; OS05G0592800. [Q6L4R7-1]
OS05T0592800-03; OS05T0592800-03; OS05G0592800. [Q6L4R7-1]
GeneIDi4339797.
KEGGiosa:4339797.

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AC130728 Genomic DNA. Translation: AAT44303.1 .
AP008211 Genomic DNA. Translation: BAF18412.1 .
CM000142 Genomic DNA. Translation: EAZ35482.1 .
AK067627 mRNA. Translation: BAG90506.1 .
AK070388 mRNA. Translation: BAG91921.1 .
RefSeqi NP_001056498.1. NM_001063033.1. [Q6L4R7-1 ]
UniGenei Os.52518.

3D structure databases

ProteinModelPortali Q6L4R7.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi OS05T0592800-02 ; OS05T0592800-02 ; OS05G0592800 . [Q6L4R7-1 ]
OS05T0592800-03 ; OS05T0592800-03 ; OS05G0592800 . [Q6L4R7-1 ]
GeneIDi 4339797.
KEGGi osa:4339797.

Organism-specific databases

Gramenei Q6L4R7.

Phylogenomic databases

eggNOGi COG0631.
InParanoidi Q6L4R7.
KOi K14497.
OMAi CFLKVDS.

Gene expression databases

ExpressionAtlasi Q6L4R7. baseline.

Family and domain databases

Gene3Di 3.60.40.10. 1 hit.
InterProi IPR001932. PP2C-like_dom.
IPR000222. PP2C_Mn2_Asp60_BS.
IPR015655. Protein_Pase_2C.
[Graphical view ]
PANTHERi PTHR13832. PTHR13832. 1 hit.
Pfami PF00481. PP2C. 1 hit.
[Graphical view ]
SMARTi SM00331. PP2C_SIG. 1 hit.
SM00332. PP2Cc. 1 hit.
[Graphical view ]
SUPFAMi SSF81606. SSF81606. 1 hit.
PROSITEi PS01032. PP2C. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  3. "The rice annotation project database (RAP-DB): 2008 update."
    The rice annotation project (RAP)
    Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.
    Strain: cv. Nipponbare.
  4. "The genomes of Oryza sativa: a history of duplications."
    Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.
    , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.
    PLoS Biol. 3:266-281(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  5. "Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
    The rice full-length cDNA consortium
    Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2).
    Strain: cv. Nipponbare.
  6. "Genome-wide and expression analysis of protein phosphatase 2C in rice and Arabidopsis."
    Xue T., Wang D., Zhang S., Ehlting J., Ni F., Jacab S., Zheng C., Zhong Y.
    BMC Genomics 9:550-550(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY, NOMENCLATURE.

Entry informationi

Entry nameiP2C53_ORYSJ
AccessioniPrimary (citable) accession number: Q6L4R7
Secondary accession number(s): B7EHS4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 3, 2009
Last sequence update: July 5, 2004
Last modified: October 29, 2014
This is version 75 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3