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Q6L4R7

- P2C53_ORYSJ

UniProt

Q6L4R7 - P2C53_ORYSJ

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Protein
Probable protein phosphatase 2C 53
Gene
Os05g0592800, LOC_Os05g51510, OsJ_018965, P0663C08.11
Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 3 out of 5 - Experimental evidence at transcript leveli

Functioni

Catalytic activityi

[a protein]-serine/threonine phosphate + H2O = [a protein]-serine/threonine + phosphate.

Cofactori

Binds 2 magnesium or manganese ions per subunit By similarity.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi180 – 1801Manganese 1 By similarity
Metal bindingi180 – 1801Manganese 2 By similarity
Metal bindingi181 – 1811Manganese 1; via carbonyl oxygen By similarity
Metal bindingi362 – 3621Manganese 2 By similarity
Metal bindingi426 – 4261Manganese 2 By similarity

GO - Molecular functioni

  1. metal ion binding Source: UniProtKB-KW
  2. protein serine/threonine phosphatase activity Source: InterPro

GO - Biological processi

  1. protein dephosphorylation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Hydrolase, Protein phosphatase

Keywords - Ligandi

Magnesium, Manganese, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Probable protein phosphatase 2C 53 (EC:3.1.3.16)
Short name:
OsPP2C53
Gene namesi
Ordered Locus Names:Os05g0592800, LOC_Os05g51510
ORF Names:OsJ_018965, P0663C08.11
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
ProteomesiUP000000763: Chromosome 5

Organism-specific databases

GrameneiQ6L4R7.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2929 Reviewed prediction
Add
BLAST
Chaini30 – 445416Probable protein phosphatase 2C 53
PRO_0000363300Add
BLAST

Structurei

3D structure databases

ProteinModelPortaliQ6L4R7.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini123 – 428306PP2C-like
Add
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi5 – 113109Ala-rich
Add
BLAST

Sequence similaritiesi

Belongs to the PP2C family.
Contains 1 PP2C-like domain.

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiCOG0631.
KOiK14497.
OMAiCFLKVDS.

Family and domain databases

Gene3Di3.60.40.10. 1 hit.
InterProiIPR001932. PP2C-like_dom.
IPR000222. PP2C_Mn2_Asp60_BS.
IPR015655. Protein_Pase_2C.
[Graphical view]
PANTHERiPTHR13832. PTHR13832. 1 hit.
PfamiPF00481. PP2C. 1 hit.
[Graphical view]
SMARTiSM00331. PP2C_SIG. 1 hit.
SM00332. PP2Cc. 1 hit.
[Graphical view]
SUPFAMiSSF81606. SSF81606. 1 hit.
PROSITEiPS01032. PP2C. 1 hit.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

This entry describes 2 isoformsi produced by alternative splicing. Align

Isoform 1 (identifier: Q6L4R7-1) [UniParc]FASTAAdd to Basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

MEDLALPAAP PAPTLSFTLL AAAAAVAEAM EEALGAALPP LTAPVPAPGD    50
DSACGSPCSV ASDCSSVASA DFEGFAELGT SLLAGPAVLF DDLTAASVAV 100
AEAAEPRAVG ATARSVFAMD CVPLWGLESI CGRRPEMEDD YAVVPRFFDL 150
PLWMVAGDAA VDGLDRASFR LPAHFFAVYD GHGGVQVANY CRKRIHAVLT 200
EELRRAEDDA CGSDLSGLES KKLWEKAFVD CFSRVDAEVG GNAASGAPPV 250
APDTVGSTAV VAVVCSSHVI VANCGDSRAV LCRGKQPLPL SLDHKPNRED 300
EYARIEALGG KVIQWNGYRV LGVLAMSRSI GDKYLKPYII PVPEVTVVAR 350
AKDDDCLILA SDGLWDVMSN EEVCDAARKR ILLWHKKNAA TASTSSAQIS 400
GDSSDPAAQA AADYLSKLAL QKGSKDNITV VVIDLKAHRK FKSKA 445
Length:445
Mass (Da):46,684
Last modified:July 5, 2004 - v1
Checksum:iE06D4D4A57E97FC1
GO
Isoform 2 (identifier: Q6L4R7-2) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-144: Missing.
     145-186: PRFFDLPLWM...AVYDGHGGVQ → MPWSRDFSTF...PISSPSTMAT

Note: No experimental confirmation available.

Show »
Length:301
Mass (Da):32,306
Checksum:i3EB37EADBA7F3952
GO

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei1 – 144144Missing in isoform 2.
VSP_036273Add
BLAST
Alternative sequencei145 – 18642PRFFD…HGGVQ → MPWSRDFSTFLCGWLPATRQ STASTGPPSAFQPISSPSTM AT in isoform 2.
VSP_036274Add
BLAST

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AC130728 Genomic DNA. Translation: AAT44303.1.
AP008211 Genomic DNA. Translation: BAF18412.1.
CM000142 Genomic DNA. Translation: EAZ35482.1.
AK067627 mRNA. Translation: BAG90506.1.
AK070388 mRNA. Translation: BAG91921.1.
RefSeqiNP_001056498.1. NM_001063033.1. [Q6L4R7-1]
UniGeneiOs.52518.

Genome annotation databases

EnsemblPlantsiOS05T0592800-02; OS05T0592800-02; OS05G0592800. [Q6L4R7-1]
OS05T0592800-03; OS05T0592800-03; OS05G0592800. [Q6L4R7-1]
GeneIDi4339797.
KEGGiosa:4339797.

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AC130728 Genomic DNA. Translation: AAT44303.1 .
AP008211 Genomic DNA. Translation: BAF18412.1 .
CM000142 Genomic DNA. Translation: EAZ35482.1 .
AK067627 mRNA. Translation: BAG90506.1 .
AK070388 mRNA. Translation: BAG91921.1 .
RefSeqi NP_001056498.1. NM_001063033.1. [Q6L4R7-1 ]
UniGenei Os.52518.

3D structure databases

ProteinModelPortali Q6L4R7.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi OS05T0592800-02 ; OS05T0592800-02 ; OS05G0592800 . [Q6L4R7-1 ]
OS05T0592800-03 ; OS05T0592800-03 ; OS05G0592800 . [Q6L4R7-1 ]
GeneIDi 4339797.
KEGGi osa:4339797.

Organism-specific databases

Gramenei Q6L4R7.

Phylogenomic databases

eggNOGi COG0631.
KOi K14497.
OMAi CFLKVDS.

Family and domain databases

Gene3Di 3.60.40.10. 1 hit.
InterProi IPR001932. PP2C-like_dom.
IPR000222. PP2C_Mn2_Asp60_BS.
IPR015655. Protein_Pase_2C.
[Graphical view ]
PANTHERi PTHR13832. PTHR13832. 1 hit.
Pfami PF00481. PP2C. 1 hit.
[Graphical view ]
SMARTi SM00331. PP2C_SIG. 1 hit.
SM00332. PP2Cc. 1 hit.
[Graphical view ]
SUPFAMi SSF81606. SSF81606. 1 hit.
PROSITEi PS01032. PP2C. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  3. "The rice annotation project database (RAP-DB): 2008 update."
    The rice annotation project (RAP)
    Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.
    Strain: cv. Nipponbare.
  4. "The genomes of Oryza sativa: a history of duplications."
    Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.
    , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.
    PLoS Biol. 3:266-281(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  5. "Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
    The rice full-length cDNA consortium
    Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2).
    Strain: cv. Nipponbare.
  6. "Genome-wide and expression analysis of protein phosphatase 2C in rice and Arabidopsis."
    Xue T., Wang D., Zhang S., Ehlting J., Ni F., Jacab S., Zheng C., Zhong Y.
    BMC Genomics 9:550-550(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY, NOMENCLATURE.

Entry informationi

Entry nameiP2C53_ORYSJ
AccessioniPrimary (citable) accession number: Q6L4R7
Secondary accession number(s): B7EHS4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 3, 2009
Last sequence update: July 5, 2004
Last modified: May 14, 2014
This is version 73 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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