Q6K977 (C3H19_ORYSJ) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Zinc finger CCCH domain-containing protein 19
Short name=OsC3H19

Gene names

Ordered Locus Names:	Os02g0831100, LOC_Os02g58440
ORF Names:	OJ1149_C12.8, OsJ_008677

Organism

Oryza sativa subsp. japonica (Rice) [Reference proteome]

Taxonomic identifier

39947 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Viridiplantae › Streptophyta › Streptophytina › Embryophyta › Tracheophyta › Euphyllophyta › Spermatophyta › Magnoliophyta › Liliopsida › commelinids › Poales › Poaceae › BEP clade › Ehrhartoideae › Oryzeae › Oryza › Oryza sativa

Protein attributes

Sequence length	647 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Sequence similarities	Contains 3 C3H1-type zinc fingers.
Sequence caution	The sequence BAD23001.1 differs from that shown. Reason: Erroneous gene model prediction. The sequence BAF10530.1 differs from that shown. Reason: Erroneous gene model prediction.

Ontologies

Keywords
Domain	Repeat Zinc-finger
Ligand	DNA-binding Metal-binding Zinc
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Molecular_function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW zinc ion binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 647	647	Zinc finger CCCH domain-containing protein 19		PRO_0000346815
Regions
	Zinc finger	16 – 45	30	C3H1-type 1
	Zinc finger	47 – 73	27	C3H1-type 2
	Zinc finger	109 – 136	28	C3H1-type 3

Sequences

	Sequence		Length	Mass (Da)
	Q6K977 [UniParc]. Last modified September 2, 2008. Version 2. Checksum: 26F44EEE71A69256	FASTA	647	71,469
	10 20 30 40 50 60 MDSAVRPPVD AEEARRRRST DCIYFLASPL TCKKGSECEY RHSDAARMNP RDCWYWFNGN 70 80 90 100 110 120 CANPKCSFRH PPLDGLVGAP TTPRTSQQSA PQVSVPAQAP VPNPASGTAK QGVPCYYFQK 130 140 150 160 170 180 GMCVKGDRCA FLHLPQATGS PAPQHTTKVF APASVPHPQL KNSWTKPNSS AQQNAPPAIF 190 200 210 220 230 240 DKPKDSAHNG KTAQKQNLTN RAGHSSGIIH DKKGSYMPSG VTKNYRPPPS TGDDLAENGV 250 260 270 280 290 300 EMGEFVREPS PGSDVLTGGA DDNTEQSLRE DRGAYRRTNG EQHIGMLRQT HDSYGFERSH 310 320 330 340 350 360 RGSAEKLLSE SRFSQREPMP LTADSSDLRQ RLLKQRRLNN PRSGQVSDRH NVYPEDERHD 370 380 390 400 410 420 RHRQRGEEQA SNDGVSSSRL RGRIRLPAET TFDRLGLQPE KERDRGPRAR LSPPSQTDLR 430 440 450 460 470 480 GKLHDRLKAK PNEDVSGNVQ SSLSKANEDA ESLNFAGPKS LAELKAKKVA GSLMKSSRSL 490 500 510 520 530 540 TGPVRMTSEI VTIKDSSDPV LFDGPKPLNA ILKRKREADS GNATDFGSKR EEHSGGDEEG 550 560 570 580 590 600 SQNDFRNIED DIVGMNTEGN GEEAFQPEDD VVYGDSLSPA DDIAAEAADD ASRELEEQQD 610 620 630 640 VETAEEYDYE MDDVNAAEEN DYQEYEDEDD DLEDDDDFAR KVGVMIT

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The map-based sequence of the rice genome." International rice genome sequencing project (IRGSP) Nature 436:793-800(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare.
[2]	"The rice annotation project database (RAP-DB): 2008 update." The rice annotation project (RAP) Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract] Cited for: GENOME REANNOTATION. Strain: cv. Nipponbare.
[3]	"The genomes of Oryza sativa: a history of duplications." Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L. , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H. PLoS Biol. 3:266-281(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare.
[4]	"Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice." The rice full-length cDNA consortium Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 259-647. Strain: cv. Nipponbare.
[5]	"Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice." Wang D., Guo Y., Wu C., Yang G., Li Y., Zheng C. BMC Genomics 9:44-44(2008) [PubMed] [Europe PMC] [Abstract] Cited for: NOMENCLATURE.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AP004082 Genomic DNA. Translation: BAD23001.1. Sequence problems. AP008208 Genomic DNA. Translation: BAF10530.1. Sequence problems. CM000139 Genomic DNA. Translation: EAZ25194.1. AK060600 mRNA. No translation available.
RefSeq	NP_001048616.1. NM_001055151.1.
UniGene	Os.81520.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	LOC_Os02g58440.1; LOC_Os02g58440.1; LOC_Os02g58440.
GeneID	4331248.
KEGG	dosa:Os02t0831100-01. osa:4331248.
Organism-specific databases
Gramene	Q6K977.
Phylogenomic databases
eggNOG	KOG4791.
HOGENOM	HOG000239634.
OMA	CIYFLAS.
Gene expression databases
ArrayExpress	Q6K977.
Family and domain databases
InterPro	IPR026290. Makorin-related. IPR000571. Znf_CCCH. [Graphical view]
PANTHER	PTHR11224. PTHR11224. 1 hit.
SMART	SM00356. ZnF_C3H1. 3 hits. [Graphical view]
PROSITE	PS50103. ZF_C3H1. 3 hits. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C3H19_ORYSJ

Accession

Primary (citable) accession number: Q6K977
Secondary accession number(s): A3AD05

Entry history

Integrated into UniProtKB/Swiss-Prot:	September 2, 2008
Last sequence update:	September 2, 2008
Last modified:	April 3, 2013
This is version 42 of the entry and version 2 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Plant Protein Annotation Program