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Q6K1Q6

- Q6K1Q6_ORYSJ

UniProt

Q6K1Q6 - Q6K1Q6_ORYSJ

Protein
Submitted name:

Putative hydroxyproline-rich glycoprotein 1

Gene

OSJNOa283G08.1

Organism
Oryza sativa subsp. japonica (Rice)
Status
Unreviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 64 (01 Oct 2014)
      Sequence version 1 (05 Jul 2004)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: InterPro

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal proteinImported

    Enzyme and pathway databases

    ReactomeiREACT_208864. SRP-dependent cotranslational protein targeting to membrane.
    REACT_209617. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
    REACT_216478. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Putative hydroxyproline-rich glycoprotein 1Imported
    Submitted name:
    Ribosomal protein L14Imported
    Gene namesi
    Name:OSJNOa283G08.1Imported
    Synonyms:OJ1234_B11.29Imported, OsRPL14Imported
    OrganismiOryza sativa subsp. japonica (Rice)Imported
    Taxonomic identifieri39947 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
    ProteomesiUP000000763: Chromosome 2

    Subcellular locationi

    GO - Cellular componenti

    1. chloroplast Source: EnsemblPlants/Gramene
    2. cytosolic large ribosomal subunit Source: EnsemblPlants/Gramene
    3. endoplasmic reticulum Source: EnsemblPlants/Gramene
    4. nucleolus Source: EnsemblPlants/Gramene
    5. plasmodesma Source: EnsemblPlants/Gramene
    6. vacuolar membrane Source: EnsemblPlants/Gramene

    Structurei

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    3J61electron microscopy5.50M1-134[»]
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    OMAiSWAKKIE.

    Family and domain databases

    Gene3Di2.30.30.30. 1 hit.
    InterProiIPR014722. Rib_L2_dom2.
    IPR002784. Ribosomal_L14.
    IPR008991. Translation_prot_SH3-like.
    [Graphical view]
    PfamiPF01929. Ribosomal_L14e. 1 hit.
    [Graphical view]
    SUPFAMiSSF50104. SSF50104. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q6K1Q6-1 [UniParc]FASTAAdd to Basket

    « Hide

    MPFKRFVEIG RVALVNYGKD YGRLVVIVDV VDQNRALVDA PDMVRCQINF    50
    KRLSLTDIKI DIKRVPKKTT LIKAMEEADV KNKWENSSWG KKLIVQKRRA 100
    SLNDFDRFKV MLAKIKRGGA IRQELAKLKK TAAA 134
    Length:134
    Mass (Da):15,387
    Last modified:July 5, 2004 - v1
    Checksum:iE5D0A1C276F716DF
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP004053 Genomic DNA. Translation: BAD21553.1.
    AP006846 Genomic DNA. Translation: BAD22517.1.
    AB378378 mRNA. Translation: BAG68299.1.

    Genome annotation databases

    EnsemblPlantsiOS02T0622300-00; OS02T0622300-00; OS02G0622300.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP004053 Genomic DNA. Translation: BAD21553.1 .
    AP006846 Genomic DNA. Translation: BAD22517.1 .
    AB378378 mRNA. Translation: BAG68299.1 .

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    3J61 electron microscopy 5.50 M 1-134 [» ]
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi OS02T0622300-00 ; OS02T0622300-00 ; OS02G0622300 .

    Phylogenomic databases

    OMAi SWAKKIE.

    Enzyme and pathway databases

    Reactomei REACT_208864. SRP-dependent cotranslational protein targeting to membrane.
    REACT_209617. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
    REACT_216478. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

    Family and domain databases

    Gene3Di 2.30.30.30. 1 hit.
    InterProi IPR014722. Rib_L2_dom2.
    IPR002784. Ribosomal_L14.
    IPR008991. Translation_prot_SH3-like.
    [Graphical view ]
    Pfami PF01929. Ribosomal_L14e. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50104. SSF50104. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Oryza sativa nipponbare(GA3) genomic DNA, chromosome 2, BAC clone:OJ1234_B11."
      Sasaki T., Matsumoto T., Yamamoto K.
      Submitted (AUG-2001) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
    2. "Oryza sativa nipponbare(GA3) genomic DNA, chromosome 2, fosmid clone:OSJNOa283G08."
      Sasaki T., Matsumoto T., Fujisawa M.
      Submitted (APR-2004) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
    3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. NipponbareImported.
    4. "The rice annotation project database (RAP-DB): 2008 update."
      The rice annotation project (RAP)
      Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENOME REANNOTATION.
      Strain: cv. NipponbareImported.
    5. Xu Z.
      Submitted (FEB-2008) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
    6. "Cloning and Expression Analysis of a Ribosomal Glycoprotein OsRPL14 from Rice."
      Zhiru D., Jiang X., Jia W., Bin J., Yongju X., Qi Z., Zhengjun X.
      Submitted (AUG-2008) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
    7. "Structures of the Sec61 complex engaged in nascent peptide translocation or membrane insertion."
      Gogala M., Becker T., Beatrix B., Armache J.P., Barrio-Garcia C., Berninghausen O., Beckmann R.
      Nature 506:107-110(2014) [PubMed] [Europe PMC] [Abstract]
      Cited for: STRUCTURE BY ELECTRON MICROSCOPY (5.50 ANGSTROMS).

    Entry informationi

    Entry nameiQ6K1Q6_ORYSJ
    AccessioniPrimary (citable) accession number: Q6K1Q6
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 5, 2004
    Last sequence update: July 5, 2004
    Last modified: October 1, 2014
    This is version 64 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    3D-structureImported, Complete proteome, Reference proteomeImported

    External Data

    Dasty 3