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Q6JBI7 (Q6JBI7_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 73. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:Lmo7 RGD 1302984
Synonyms:LMO7 RGD 1302984
OrganismRattus norvegicus (Rat) EMBL AAT02180.1
Taxonomic identifier10116 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Protein attributes

Sequence length1729 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Sequence similarities

Contains 1 LIM zinc-binding domain.

Contains 1 PDZ (DHR) domain. RuleBase RU003354

Sequences

Sequence LengthMass (Da)Tools
Q6JBI7 [UniParc].

Last modified July 5, 2004. Version 1.
Checksum: 7237E98173E2237A

FASTA1,729195,571
        10         20         30         40         50         60 
MEGMEDAEAD CSIAFAEAQR WVEAVTEKNF ETRDFRASLE NGVLLCDLIN KLKPGVVRKI 

        70         80         90        100        110        120 
NRLSTPIAGL DNINVFLKAC EQIGLKEAQL FHPGDLQDLS NRVTVKQEET DRRLKNVLIT 

       130        140        150        160        170        180 
LYWLGRKAQN NPYYHGPYLN LKAFETLLGQ ALTKALEDSS CLKRSGRDSG YGDIWCPDRG 

       190        200        210        220        230        240 
DFPAPPGSHR REDSFESLDS LGSRSLTSCS SDLTLRGGRE GCESDNDWEF TFKMQDYNKD 

       250        260        270        280        290        300 
DMSYRRISAI EPKSALPFNR FLPNKSKQPS YVPAPLRKKR PDKNEDNRRS WASPVYTETE 

       310        320        330        340        350        360 
GTFSSTQRRA WGPKMENWHT VQETSTSSWC LEEEEEKVTR LPNVVKDDLY VRKLSPVMPS 

       370        380        390        400        410        420 
PGSSFDQFLP KGWTPEDMNW KKIKRETYKP WYKEFQGLSQ FLLLQALQTY SDDILSSETN 

       430        440        450        460        470        480 
VKLDPTSGPR LITRRKNFSP TPGYRAHDLE PQSLDPDLEN DDFFVRKTRA FHANPCVLRA 

       490        500        510        520        530        540 
FEDFRRFSEP DDAVERDIIL QCREGELVLP DLEKDDMIVR RIPAQKKEVP LSGAPDRYQP 

       550        560        570        580        590        600 
VPFPEPWTLP PEIQAKFLSV LERTCPPKDK PSSCRVLVPS HRLKKDDMLT RKIQSWKLGT 

       610        620        630        640        650        660 
AVPPISFRPG PCSEADLRKW EAIREASRLR HRKRLMVERL FQKIYGENGS KSLSDVSAED 

       670        680        690        700        710        720 
VQSLRQLRYE EMQKIKSQLK EQDQKWQDDL AKWKDRRKSY TSDLQKKKEE REEIEKQALE 

       730        740        750        760        770        780 
KSDRSSKTFR EMLQDRESQS STTTSRRRIY SSDDILDDGV LPPTVTLSET SYQSERLEDK 

       790        800        810        820        830        840 
ARAHPAEMPK EDSTTFASRE DGIAAEIPLA SHIPEERRQA PWPSAETRQA SSSSAESHQA 

       850        860        870        880        890        900 
SLPSTESDQA RLPSAEPHQA SFSSAEPRQV PLVSAEPHQA SSFSSTEPHQ ASLSSALQRP 

       910        920        930        940        950        960 
SSLSSSQQSW STRGESTRIS ASLPRSYQRS DTARLTSVVT ARPFGTSSRG ISSLPRSYTM 

       970        980        990       1000       1010       1020 
DDGWIYNGDV EVVKREQHDS GRAAGMKPDS SHFILGSSSE KEVATGEDGA SLSSFVLPSS 

      1030       1040       1050       1060       1070       1080 
SSLSHDQAAS SKATFSSTSG LDSVSDSGEG RSSSLREVSR SPDQFSDMRI SINQTPGTKH 

      1090       1100       1110       1120       1130       1140 
DFGFTIKWDV SGISVASVEK GSPAEFSQLQ VDDEILAINN TKFSYKDTKK WEEAMANAQE 

      1150       1160       1170       1180       1190       1200 
TGNLVMDVRR YGKSGSPETK WIDTTSGIYS TEKSSSLSVT TDFSESLQSP YSESKEINGI 

      1210       1220       1230       1240       1250       1260 
HEGSNAFDSK ASESISLKNL KRRSQFFEQG SSDSVAPDLP VPTLSAPSRW AWDQEEERRR 

      1270       1280       1290       1300       1310       1320 
QERWQKEQDR LLQEKYQREQ EKLREEWQRA QQEAERENSK YLDEELMVLN SNSISLTSRE 

      1330       1340       1350       1360       1370       1380 
SVTASWEPSW SEGSKSLDRE GTRAGDEDRG QLEDDAVYED QSQKLQERLM LEHEKKRKEQ 

      1390       1400       1410       1420       1430       1440 
EAQEEELRKQ REAEAQARAE AEAQARAEAQ ARAEAQAQAE AEARKRAEAQ KLQAERERET 

      1450       1460       1470       1480       1490       1500 
SVKIYQYRRP IDSYDLPKRE EESSGLLPID RSKSRSTTEL NDPLIEKSGS SKYSDRIGTT 

      1510       1520       1530       1540       1550       1560 
SFSQRSSKKD QGPSEAELER QQILQEMRKK TSLHNDNSWI RQRSASVNKE PICLTGIMRR 

      1570       1580       1590       1600       1610       1620 
GESLDNLDSQ RPGSWRQSSW HSQPAGVYAS SSVQDFSRLP PQLLSTSNRA YMRNPSSAVP 

      1630       1640       1650       1660       1670       1680 
PLAGSVKTSP GSPSPRSHSP SMSQSGSQLR NRSVSGKRVC SYCNSILGKG AAMIIETLGL 

      1690       1700       1710       1720 
CYHLHCFKCV SCERDLGGSS SGAEVRIRNH QLYCNDCYLR FKSGRPTAM 

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References

[1]"Involvement of LMO7 in the association of two cell-cell adhesion molecules, nectin and E-cadherin, through afadin and alpha-actinin in epithelial cells."
Ooshio T., Irie K., Morimoto K., Fukuhara A., Imai T., Takai Y.
J. Biol. Chem. 279:31365-31373(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Sprague-Dawley EMBL AAT02180.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AY533473 mRNA. Translation: AAT02180.1.
RefSeqNP_001001515.1. NM_001001515.1.
UniGeneRn.98417.

3D structure databases

ProteinModelPortalQ6JBI7.
SMRQ6JBI7. Positions 1064-1152.
ModBaseSearch...
MobiDBSearch...

PTM databases

PhosphoSiteQ6JBI7.

Proteomic databases

PRIDEQ6JBI7.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID361084.
KEGGrno:361084.
UCSCRGD:1302984. rat.

Organism-specific databases

CTD4008.
RGD1302984. Lmo7.

Phylogenomic databases

HOGENOMHOG000043081.
HOVERGENHBG049143.
InParanoidQ6JBI7.
KOK06084.
PhylomeDBQ6JBI7.

Gene expression databases

GenevestigatorQ6JBI7.

Family and domain databases

Gene3D1.10.418.10. 1 hit.
2.10.110.10. 1 hit.
2.30.42.10. 1 hit.
InterProIPR001715. CH-domain.
IPR001478. PDZ.
IPR003096. SM22_calponin.
IPR001781. Znf_LIM.
[Graphical view]
PfamPF00307. CH. 1 hit.
PF00412. LIM. 1 hit.
PF00595. PDZ. 1 hit.
[Graphical view]
PRINTSPR00888. SM22CALPONIN.
SMARTSM00033. CH. 1 hit.
SM00132. LIM. 1 hit.
SM00228. PDZ. 1 hit.
[Graphical view]
SUPFAMSSF47576. SSF47576. 1 hit.
SSF50156. SSF50156. 1 hit.
PROSITEPS50021. CH. 1 hit.
PS00478. LIM_DOMAIN_1. 1 hit.
PS50023. LIM_DOMAIN_2. 1 hit.
PS50106. PDZ. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio675156.

Entry information

Entry nameQ6JBI7_RAT
AccessionPrimary (citable) accession number: Q6JBI7
Entry history
Integrated into UniProtKB/TrEMBL: July 5, 2004
Last sequence update: July 5, 2004
Last modified: April 16, 2014
This is version 73 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)