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Q6JBI7

- Q6JBI7_RAT

UniProt

Q6JBI7 - Q6JBI7_RAT

Protein
Submitted name:

LMO7a

Gene

Lmo7

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 76 (01 Oct 2014)
      Sequence version 1 (05 Jul 2004)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. actinin binding Source: RGD
    2. protein binding Source: RGD
    3. protein C-terminus binding Source: RGD
    4. zinc ion binding Source: InterPro

    GO - Biological processi

    1. single organismal cell-cell adhesion Source: RGD

    Keywords - Ligandi

    Metal-binding, Zinc

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    LMO7aImported
    Gene namesi
    Name:Lmo7Imported
    Synonyms:LMO7Imported
    OrganismiRattus norvegicus (Rat)Imported
    Taxonomic identifieri10116 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

    Organism-specific databases

    RGDi1302984. Lmo7.

    Subcellular locationi

    GO - Cellular componenti

    1. apical plasma membrane Source: RGD
    2. cell-cell adherens junction Source: RGD

    PTM / Processingi

    Proteomic databases

    PRIDEiQ6JBI7.

    PTM databases

    PhosphoSiteiQ6JBI7.

    Expressioni

    Gene expression databases

    GenevestigatoriQ6JBI7.

    Structurei

    3D structure databases

    ProteinModelPortaliQ6JBI7.
    SMRiQ6JBI7. Positions 1064-1152.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Contains 1 PDZ (DHR) domain.UniRule annotation

    Keywords - Domaini

    LIM domainUniRule annotationSAAS annotation

    Phylogenomic databases

    HOGENOMiHOG000043081.
    HOVERGENiHBG049143.
    InParanoidiQ6JBI7.
    KOiK06084.
    PhylomeDBiQ6JBI7.

    Family and domain databases

    Gene3Di1.10.418.10. 1 hit.
    2.10.110.10. 1 hit.
    2.30.42.10. 1 hit.
    InterProiIPR001715. CH-domain.
    IPR001478. PDZ.
    IPR003096. SM22_calponin.
    IPR001781. Znf_LIM.
    [Graphical view]
    PfamiPF00307. CH. 1 hit.
    PF00412. LIM. 1 hit.
    PF00595. PDZ. 1 hit.
    [Graphical view]
    PRINTSiPR00888. SM22CALPONIN.
    SMARTiSM00033. CH. 1 hit.
    SM00132. LIM. 1 hit.
    SM00228. PDZ. 1 hit.
    [Graphical view]
    SUPFAMiSSF47576. SSF47576. 1 hit.
    SSF50156. SSF50156. 1 hit.
    PROSITEiPS50021. CH. 1 hit.
    PS00478. LIM_DOMAIN_1. 1 hit.
    PS50023. LIM_DOMAIN_2. 1 hit.
    PS50106. PDZ. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q6JBI7-1 [UniParc]FASTAAdd to Basket

    « Hide

    MEGMEDAEAD CSIAFAEAQR WVEAVTEKNF ETRDFRASLE NGVLLCDLIN     50
    KLKPGVVRKI NRLSTPIAGL DNINVFLKAC EQIGLKEAQL FHPGDLQDLS 100
    NRVTVKQEET DRRLKNVLIT LYWLGRKAQN NPYYHGPYLN LKAFETLLGQ 150
    ALTKALEDSS CLKRSGRDSG YGDIWCPDRG DFPAPPGSHR REDSFESLDS 200
    LGSRSLTSCS SDLTLRGGRE GCESDNDWEF TFKMQDYNKD DMSYRRISAI 250
    EPKSALPFNR FLPNKSKQPS YVPAPLRKKR PDKNEDNRRS WASPVYTETE 300
    GTFSSTQRRA WGPKMENWHT VQETSTSSWC LEEEEEKVTR LPNVVKDDLY 350
    VRKLSPVMPS PGSSFDQFLP KGWTPEDMNW KKIKRETYKP WYKEFQGLSQ 400
    FLLLQALQTY SDDILSSETN VKLDPTSGPR LITRRKNFSP TPGYRAHDLE 450
    PQSLDPDLEN DDFFVRKTRA FHANPCVLRA FEDFRRFSEP DDAVERDIIL 500
    QCREGELVLP DLEKDDMIVR RIPAQKKEVP LSGAPDRYQP VPFPEPWTLP 550
    PEIQAKFLSV LERTCPPKDK PSSCRVLVPS HRLKKDDMLT RKIQSWKLGT 600
    AVPPISFRPG PCSEADLRKW EAIREASRLR HRKRLMVERL FQKIYGENGS 650
    KSLSDVSAED VQSLRQLRYE EMQKIKSQLK EQDQKWQDDL AKWKDRRKSY 700
    TSDLQKKKEE REEIEKQALE KSDRSSKTFR EMLQDRESQS STTTSRRRIY 750
    SSDDILDDGV LPPTVTLSET SYQSERLEDK ARAHPAEMPK EDSTTFASRE 800
    DGIAAEIPLA SHIPEERRQA PWPSAETRQA SSSSAESHQA SLPSTESDQA 850
    RLPSAEPHQA SFSSAEPRQV PLVSAEPHQA SSFSSTEPHQ ASLSSALQRP 900
    SSLSSSQQSW STRGESTRIS ASLPRSYQRS DTARLTSVVT ARPFGTSSRG 950
    ISSLPRSYTM DDGWIYNGDV EVVKREQHDS GRAAGMKPDS SHFILGSSSE 1000
    KEVATGEDGA SLSSFVLPSS SSLSHDQAAS SKATFSSTSG LDSVSDSGEG 1050
    RSSSLREVSR SPDQFSDMRI SINQTPGTKH DFGFTIKWDV SGISVASVEK 1100
    GSPAEFSQLQ VDDEILAINN TKFSYKDTKK WEEAMANAQE TGNLVMDVRR 1150
    YGKSGSPETK WIDTTSGIYS TEKSSSLSVT TDFSESLQSP YSESKEINGI 1200
    HEGSNAFDSK ASESISLKNL KRRSQFFEQG SSDSVAPDLP VPTLSAPSRW 1250
    AWDQEEERRR QERWQKEQDR LLQEKYQREQ EKLREEWQRA QQEAERENSK 1300
    YLDEELMVLN SNSISLTSRE SVTASWEPSW SEGSKSLDRE GTRAGDEDRG 1350
    QLEDDAVYED QSQKLQERLM LEHEKKRKEQ EAQEEELRKQ REAEAQARAE 1400
    AEAQARAEAQ ARAEAQAQAE AEARKRAEAQ KLQAERERET SVKIYQYRRP 1450
    IDSYDLPKRE EESSGLLPID RSKSRSTTEL NDPLIEKSGS SKYSDRIGTT 1500
    SFSQRSSKKD QGPSEAELER QQILQEMRKK TSLHNDNSWI RQRSASVNKE 1550
    PICLTGIMRR GESLDNLDSQ RPGSWRQSSW HSQPAGVYAS SSVQDFSRLP 1600
    PQLLSTSNRA YMRNPSSAVP PLAGSVKTSP GSPSPRSHSP SMSQSGSQLR 1650
    NRSVSGKRVC SYCNSILGKG AAMIIETLGL CYHLHCFKCV SCERDLGGSS 1700
    SGAEVRIRNH QLYCNDCYLR FKSGRPTAM 1729
    Length:1,729
    Mass (Da):195,571
    Last modified:July 5, 2004 - v1
    Checksum:i7237E98173E2237A
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AY533473 mRNA. Translation: AAT02180.1.
    RefSeqiNP_001001515.1. NM_001001515.1.
    UniGeneiRn.98417.

    Genome annotation databases

    GeneIDi361084.
    KEGGirno:361084.
    UCSCiRGD:1302984. rat.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AY533473 mRNA. Translation: AAT02180.1 .
    RefSeqi NP_001001515.1. NM_001001515.1.
    UniGenei Rn.98417.

    3D structure databases

    ProteinModelPortali Q6JBI7.
    SMRi Q6JBI7. Positions 1064-1152.
    ModBasei Search...
    MobiDBi Search...

    PTM databases

    PhosphoSitei Q6JBI7.

    Proteomic databases

    PRIDEi Q6JBI7.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 361084.
    KEGGi rno:361084.
    UCSCi RGD:1302984. rat.

    Organism-specific databases

    CTDi 4008.
    RGDi 1302984. Lmo7.

    Phylogenomic databases

    HOGENOMi HOG000043081.
    HOVERGENi HBG049143.
    InParanoidi Q6JBI7.
    KOi K06084.
    PhylomeDBi Q6JBI7.

    Miscellaneous databases

    NextBioi 675156.

    Gene expression databases

    Genevestigatori Q6JBI7.

    Family and domain databases

    Gene3Di 1.10.418.10. 1 hit.
    2.10.110.10. 1 hit.
    2.30.42.10. 1 hit.
    InterProi IPR001715. CH-domain.
    IPR001478. PDZ.
    IPR003096. SM22_calponin.
    IPR001781. Znf_LIM.
    [Graphical view ]
    Pfami PF00307. CH. 1 hit.
    PF00412. LIM. 1 hit.
    PF00595. PDZ. 1 hit.
    [Graphical view ]
    PRINTSi PR00888. SM22CALPONIN.
    SMARTi SM00033. CH. 1 hit.
    SM00132. LIM. 1 hit.
    SM00228. PDZ. 1 hit.
    [Graphical view ]
    SUPFAMi SSF47576. SSF47576. 1 hit.
    SSF50156. SSF50156. 1 hit.
    PROSITEi PS50021. CH. 1 hit.
    PS00478. LIM_DOMAIN_1. 1 hit.
    PS50023. LIM_DOMAIN_2. 1 hit.
    PS50106. PDZ. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Involvement of LMO7 in the association of two cell-cell adhesion molecules, nectin and E-cadherin, through afadin and alpha-actinin in epithelial cells."
      Ooshio T., Irie K., Morimoto K., Fukuhara A., Imai T., Takai Y.
      J. Biol. Chem. 279:31365-31373(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: Sprague-DawleyImported.

    Entry informationi

    Entry nameiQ6JBI7_RAT
    AccessioniPrimary (citable) accession number: Q6JBI7
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 5, 2004
    Last sequence update: July 5, 2004
    Last modified: October 1, 2014
    This is version 76 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)