Q6JBI7 (Q6JBI7_RAT) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
LMO7a EMBL AAT02180.1

Gene names

Name:	Lmo7 RGD 1302984
Synonyms:	LMO7 RGD 1302984

Organism

Rattus norvegicus (Rat) EMBL AAT02180.1

Taxonomic identifier

10116 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length	1729 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Sequence similarities

Contains 1 LIM zinc-binding domain. RuleBase RU000350 Contains 1 PDZ (DHR) domain. RuleBase RU003354

Ontologies

Keywords
Domain	LIM domain RuleBase RU000350 SAAS SAAS001781
Ligand	Metal-binding Zinc
Gene Ontology (GO)
Biological_process	cell-cell adhesion Inferred from expression pattern Ref.1. Source: RGD
Cellular_component	apical plasma membrane Inferred from direct assay Ref.1. Source: RGD cell-cell adherens junction Inferred from direct assay Ref.1. Source: RGD
Molecular_function	actinin binding Inferred from direct assay Ref.1. Source: RGD zinc ion binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q6JBI7 [UniParc]. Last modified July 5, 2004. Version 1. Checksum: 7237E98173E2237A	FASTA	1,729	195,571
	10 20 30 40 50 60 MEGMEDAEAD CSIAFAEAQR WVEAVTEKNF ETRDFRASLE NGVLLCDLIN KLKPGVVRKI 70 80 90 100 110 120 NRLSTPIAGL DNINVFLKAC EQIGLKEAQL FHPGDLQDLS NRVTVKQEET DRRLKNVLIT 130 140 150 160 170 180 LYWLGRKAQN NPYYHGPYLN LKAFETLLGQ ALTKALEDSS CLKRSGRDSG YGDIWCPDRG 190 200 210 220 230 240 DFPAPPGSHR REDSFESLDS LGSRSLTSCS SDLTLRGGRE GCESDNDWEF TFKMQDYNKD 250 260 270 280 290 300 DMSYRRISAI EPKSALPFNR FLPNKSKQPS YVPAPLRKKR PDKNEDNRRS WASPVYTETE 310 320 330 340 350 360 GTFSSTQRRA WGPKMENWHT VQETSTSSWC LEEEEEKVTR LPNVVKDDLY VRKLSPVMPS 370 380 390 400 410 420 PGSSFDQFLP KGWTPEDMNW KKIKRETYKP WYKEFQGLSQ FLLLQALQTY SDDILSSETN 430 440 450 460 470 480 VKLDPTSGPR LITRRKNFSP TPGYRAHDLE PQSLDPDLEN DDFFVRKTRA FHANPCVLRA 490 500 510 520 530 540 FEDFRRFSEP DDAVERDIIL QCREGELVLP DLEKDDMIVR RIPAQKKEVP LSGAPDRYQP 550 560 570 580 590 600 VPFPEPWTLP PEIQAKFLSV LERTCPPKDK PSSCRVLVPS HRLKKDDMLT RKIQSWKLGT 610 620 630 640 650 660 AVPPISFRPG PCSEADLRKW EAIREASRLR HRKRLMVERL FQKIYGENGS KSLSDVSAED 670 680 690 700 710 720 VQSLRQLRYE EMQKIKSQLK EQDQKWQDDL AKWKDRRKSY TSDLQKKKEE REEIEKQALE 730 740 750 760 770 780 KSDRSSKTFR EMLQDRESQS STTTSRRRIY SSDDILDDGV LPPTVTLSET SYQSERLEDK 790 800 810 820 830 840 ARAHPAEMPK EDSTTFASRE DGIAAEIPLA SHIPEERRQA PWPSAETRQA SSSSAESHQA 850 860 870 880 890 900 SLPSTESDQA RLPSAEPHQA SFSSAEPRQV PLVSAEPHQA SSFSSTEPHQ ASLSSALQRP 910 920 930 940 950 960 SSLSSSQQSW STRGESTRIS ASLPRSYQRS DTARLTSVVT ARPFGTSSRG ISSLPRSYTM 970 980 990 1000 1010 1020 DDGWIYNGDV EVVKREQHDS GRAAGMKPDS SHFILGSSSE KEVATGEDGA SLSSFVLPSS 1030 1040 1050 1060 1070 1080 SSLSHDQAAS SKATFSSTSG LDSVSDSGEG RSSSLREVSR SPDQFSDMRI SINQTPGTKH 1090 1100 1110 1120 1130 1140 DFGFTIKWDV SGISVASVEK GSPAEFSQLQ VDDEILAINN TKFSYKDTKK WEEAMANAQE 1150 1160 1170 1180 1190 1200 TGNLVMDVRR YGKSGSPETK WIDTTSGIYS TEKSSSLSVT TDFSESLQSP YSESKEINGI 1210 1220 1230 1240 1250 1260 HEGSNAFDSK ASESISLKNL KRRSQFFEQG SSDSVAPDLP VPTLSAPSRW AWDQEEERRR 1270 1280 1290 1300 1310 1320 QERWQKEQDR LLQEKYQREQ EKLREEWQRA QQEAERENSK YLDEELMVLN SNSISLTSRE 1330 1340 1350 1360 1370 1380 SVTASWEPSW SEGSKSLDRE GTRAGDEDRG QLEDDAVYED QSQKLQERLM LEHEKKRKEQ 1390 1400 1410 1420 1430 1440 EAQEEELRKQ REAEAQARAE AEAQARAEAQ ARAEAQAQAE AEARKRAEAQ KLQAERERET 1450 1460 1470 1480 1490 1500 SVKIYQYRRP IDSYDLPKRE EESSGLLPID RSKSRSTTEL NDPLIEKSGS SKYSDRIGTT 1510 1520 1530 1540 1550 1560 SFSQRSSKKD QGPSEAELER QQILQEMRKK TSLHNDNSWI RQRSASVNKE PICLTGIMRR 1570 1580 1590 1600 1610 1620 GESLDNLDSQ RPGSWRQSSW HSQPAGVYAS SSVQDFSRLP PQLLSTSNRA YMRNPSSAVP 1630 1640 1650 1660 1670 1680 PLAGSVKTSP GSPSPRSHSP SMSQSGSQLR NRSVSGKRVC SYCNSILGKG AAMIIETLGL 1690 1700 1710 1720 CYHLHCFKCV SCERDLGGSS SGAEVRIRNH QLYCNDCYLR FKSGRPTAM

References

[1]

"Involvement of LMO7 in the association of two cell-cell adhesion molecules, nectin and E-cadherin, through afadin and alpha-actinin in epithelial cells." Ooshio T., Irie K., Morimoto K., Fukuhara A., Imai T., Takai Y. J. Biol. Chem. 279:31365-31373(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: Sprague-Dawley EMBL AAT02180.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AY533473 mRNA. Translation: AAT02180.1.
IPI	IPI00421346.
RefSeq	NP_001001515.1. NM_001001515.1.
UniGene	Rn.98417.
3D structure databases
ProteinModelPortal	Q6JBI7.
SMR	Q6JBI7. Positions 1064-1152.
ModBase	Search...
PTM databases
PhosphoSite	Q6JBI7.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	361084.
KEGG	rno:361084.
UCSC	RGD:1302984. rat.
Organism-specific databases
CTD	4008.
RGD	1302984. Lmo7.
Phylogenomic databases
HOGENOM	HOG000043081.
HOVERGEN	HBG049143.
InParanoid	Q6JBI7.
KO	K06084.
OrthoDB	EOG49GKFQ.
Gene expression databases
Genevestigator	Q6JBI7.
Family and domain databases
Gene3D	1.10.418.10. 1 hit. 2.10.110.10. 1 hit.
InterPro	IPR001715. CH-domain. IPR001478. PDZ. IPR003096. SM22_calponin. IPR001781. Znf_LIM. [Graphical view]
Pfam	PF00307. CH. 1 hit. PF00412. LIM. 1 hit. PF00595. PDZ. 1 hit. [Graphical view]
PRINTS	PR00888. SM22CALPONIN.
SMART	SM00033. CH. 1 hit. SM00132. LIM. 1 hit. SM00228. PDZ. 1 hit. [Graphical view]
SUPFAM	SSF47576. Calponin-homology. 1 hit. SSF50156. PDZ. 1 hit.
PROSITE	PS50021. CH. 1 hit. PS00478. LIM_DOMAIN_1. 1 hit. PS50023. LIM_DOMAIN_2. 1 hit. PS50106. PDZ. 1 hit. [Graphical view]
ProtoNet	Search...
Other
NextBio	675156.

Entry information

Entry name

Q6JBI7_RAT

Accession

Primary (citable) accession number: Q6JBI7

Entry history

Integrated into UniProtKB/TrEMBL:	July 5, 2004
Last sequence update:	July 5, 2004
Last modified:	April 3, 2013
This is version 68 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)