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Reviewed, UniProtKB/Swiss-Prot Q6J163 (5NG4_PINTA)

Last modified July 22, 2008. Version 16. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

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Names and origin

Protein namesRecommended name:
    Auxin-induced protein 5NG4
OrganismPinus taeda (Loblolly pine)
Taxonomic identifier3352 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Coniferopsida › Coniferales › Pinaceae › Pinus › Pinus

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Protein attributes

Sequence length410 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level.

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General annotation (Comments)

Subcellular location

Membrane; Multi-pass membrane protein Potential. Note: Detected in the periphery of cells and punctate structures throughout cytoplasm. Ref.1

Induction

By auxin in hypocotyls, root and stems but not in cotyledons and needles. To a greater degree in juvenile than mature shoots. Ref.1

Sequence similarities

Contains 1 DUF6 domain.

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Ontologies

Keywords
   Cellular componentMembrane
   DomainTransmembrane
   PTMGlycoprotein
Gene Ontology (GO)
   Biological processauxin mediated signaling pathway Ref.1

Inferred from direct assay. Source: UniProtKB

transport Ref.1

Non-traceable author statement. Source: UniProtKB

   Cellular componentcell cortex Ref.1

Inferred from direct assay. Source: UniProtKB

integral to plasma membrane Ref.1

Non-traceable author statement. Source: UniProtKB

Complete GO annotation...

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Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 410410Auxin-induced protein 5NG4
PRO_0000235823

Regions

Topological domain1 – 1616Cytoplasmic Potential
Transmembrane17 – 3721 Potential
Topological domain38 – 4710Extracellular Potential
Transmembrane48 – 6821 Potential
Topological domain69 – 746Cytoplasmic Potential
Transmembrane75 – 9521 Potential
Topological domain96 – 10914Extracellular Potential
Transmembrane110 – 13021 Potential
Topological domain131 – 14111Cytoplasmic Potential
Transmembrane142 – 16221 Potential
Topological domain163 – 19634Extracellular Potential
Transmembrane197 – 21721 Potential
Topological domain218 – 22912Cytoplasmic Potential
Transmembrane230 – 25021 Potential
Topological domain251 – 26414Extracellular Potential
Transmembrane265 – 28521 Potential
Topological domain286 – 2927Cytoplasmic Potential
Transmembrane293 – 31321 Potential
Topological domain314 – 3174Extracellular Potential
Transmembrane318 – 33821 Potential
Topological domain339 – 41072Cytoplasmic Potential
Domain209 – 338130DUF6

Amino acid modifications

Glycosylation1961N-linked (GlcNAc...) Potential

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Sequences

Sequence LengthMass (Da)Tools
Q6J163-1 [UniParc].

Last modified July 5, 2004. Version 1.
Checksum: DD40B4039ADDA8C3

FASTA41044,975
        10         20         30         40         50         60 
MASNIMQRCN VFMSERVKLH AAMLALQFGY AGFHIVSRAA LNMGVSKVVF PVYRNILALM 

        70         80         90        100        110        120 
LIGPCAYFLE KKERPALTLS FLIQFFLLAL CGITGQSRIL SLRIVLHIPT FASAIQNSVP 

       130        140        150        160        170        180 
AITFIMAAAL RLEKVHISRR DGLAKIIGTV ACVSGATIIT LYKGPPITHI WRPNLEVTAS 

       190        200        210        220        230        240 
YFKAFQGNDL SAKSENWTLG CIYLLGNCLA WSGWIVLQAP VLKRYPARLS VTSFTCFFGV 

       250        260        270        280        290        300 
IQFLIIAAFF ETDLEHWKIH SGGELFTILY AGFVASGIAF SVQIWCIDRG GPVFVAVYQP 

       310        320        330        340        350        360 
VQTIAVAIMA SIILGEQFYL GGIFGAILII IGLYLVLWGK SEEKRLGLLQ AKSSMVPENQ 

       370        380        390        400        410 
PDNMDQSATL IINSSNGIKP NTSSSLTQPL LLDTSYKTVN IPSPSDEPQP

« Hide

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References

[1]"An auxin-inducible gene from loblolly pine (Pinus taeda L.) is differentially expressed in mature and juvenile-phase shoots and encodes a putative transmembrane protein."
Busov V.B., Johannes E., Whetten R.W., Sederoff R.R., Spiker S.L., Lanz-Garcia C., Goldfarb B.
Planta 218:916-927(2004) [PubMed: 14722770] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA], SUBCELLULAR LOCATION, INDUCTION.
Tissue: Shoot.

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Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AY608411 mRNA. Translation: AAT37621.1.

3D structure databases

ModBaseSearch...

Family and domain databases

InterProIPR000620. DUF6_TM.
[Graphical view]
PfamPF00892. DUF6. 1 hit.
[Graphical view]
ProtoNetSearch...

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Entry information

Entry name5NG4_PINTA
AccessionPrimary (citable) accession number: Q6J163
Entry history
Integrated into UniProtKB/Swiss-Prot: May 16, 2006
Last sequence update: July 5, 2004
Last modified: July 22, 2008
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectPPAP (Plant Proteome Annotation Project)

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Relevant documents

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents