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Q6IRL1 (Q6IRL1_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified January 22, 2014. Version 81. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length674 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Sequence similarities

Contains Gla (gamma-carboxy-glutamate) domain. SAAS SAAS000152

Sequences

Sequence LengthMass (Da)Tools
Q6IRL1 [UniParc].

Last modified July 5, 2004. Version 1.
Checksum: CC9A5EBD04480AE7

FASTA67474,672
        10         20         30         40         50         60 
MPPPPGPTAA LGTALLLLLL ASESSHTVLL RAREAAQFLR PRQRRAYQVF EEAKQGHLER 

        70         80         90        100        110        120 
ECVEEVCSKE EAREVFENDP ETDYFYPRYQ ECMRKYGRPE DKNPNFATCV KNLPDQCTPN 

       130        140        150        160        170        180 
PCDKKGTQLC QDLMGNFFCL CKDGWGGRLC DKDVNECSQK NGGCSQVCHN KPGSFQCACH 

       190        200        210        220        230        240 
SGFSLQSDNK SCQDIDECTD SDTCGDARCK NLPGSYSCLC DKGYTYSSKE KTCQDVDECQ 

       250        260        270        280        290        300 
QDRCEQTCVN SPGSYTCHCN GRGGLKLSPD MDTCEDILPC VPFSMAKSVK SLYLGRMFSG 

       310        320        330        340        350        360 
TPVIRLRFKR LQPTRLLAEF DFRTFDPEGV LFFAGGRSDS TWIVLGFRAG RLELQLRYNG 

       370        380        390        400        410        420 
VGRITSSGPT INHGMWQTIS VEELDRNLVI KVNKDAVMKI AVAGGLFQLE RGLYHLNLTV 

       430        440        450        460        470        480 
GGIPFKESDL VQPINPRLDG CMRSWNWLNG EDSAIQETVK ANTKMQCFSV TERGSFFPGN 

       490        500        510        520        530        540 
GFAFYSLNYT RTSLDVGTET TWEVEVVARI RPATDTGVLM ALVGDKDVVL LSVALVDYHS 

       550        560        570        580        590        600 
TKKLKKQLVV LAVENVALAL MEIKVCDSQE HTVTVSLRDG EATLEVDGTK GQSEVSTAQL 

       610        620        630        640        650        660 
QERLDLLKTR LQGSVLTFVG GLPDVQVTST PVTAFYRGCM TLEVNGKTLD LDTASYKHSD 

       670 
ITSHSCPPVE HVTA 

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References

[1]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M. expand/collapse author list , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Lung EMBL AAH70881.1.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
BC070881 mRNA. Translation: AAH70881.1.
RefSeqNP_476441.2. NM_057100.2.
UniGeneRn.52228.

3D structure databases

ProteinModelPortalQ6IRL1.
SMRQ6IRL1. Positions 50-89, 276-670.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID58935.
KEGGrno:58935.

Organism-specific databases

CTD2621.
RGD61913. Gas6.

Phylogenomic databases

HOVERGENHBG051702.
InParanoidQ6IRL1.
KOK05464.

Gene expression databases

GenevestigatorQ6IRL1.

Family and domain databases

Gene3D2.60.120.200. 2 hits.
4.10.740.10. 1 hit.
InterProIPR026823. cEGF.
IPR017857. Coagulation_fac_subgr_Gla_dom.
IPR008985. ConA-like_lec_gl_sf.
IPR013320. ConA-like_subgrp.
IPR000742. EG-like_dom.
IPR001881. EGF-like_Ca-bd_dom.
IPR013032. EGF-like_CS.
IPR000152. EGF-type_Asp/Asn_hydroxyl_site.
IPR018097. EGF_Ca-bd_CS.
IPR000294. GLA_domain.
IPR009030. Growth_fac_rcpt_N_dom.
IPR001791. Laminin_G.
[Graphical view]
PfamPF12662. cEGF. 1 hit.
PF00594. Gla. 1 hit.
PF00054. Laminin_G_1. 1 hit.
PF02210. Laminin_G_2. 1 hit.
[Graphical view]
PRINTSPR00001. GLABLOOD.
SMARTSM00181. EGF. 1 hit.
SM00179. EGF_CA. 3 hits.
SM00069. GLA. 1 hit.
SM00282. LamG. 2 hits.
[Graphical view]
SUPFAMSSF49899. SSF49899. 2 hits.
SSF57184. SSF57184. 1 hit.
SSF57630. SSF57630. 1 hit.
PROSITEPS00010. ASX_HYDROXYL. 4 hits.
PS00022. EGF_1. 1 hit.
PS01186. EGF_2. 3 hits.
PS50026. EGF_3. 4 hits.
PS01187. EGF_CA. 3 hits.
PS00011. GLA_1. 1 hit.
PS50998. GLA_2. 1 hit.
PS50025. LAM_G_DOMAIN. 2 hits.
[Graphical view]
ProtoNetSearch...

Other

NextBio611509.

Entry information

Entry nameQ6IRL1_RAT
AccessionPrimary (citable) accession number: Q6IRL1
Entry history
Integrated into UniProtKB/TrEMBL: July 5, 2004
Last sequence update: July 5, 2004
Last modified: January 22, 2014
This is version 81 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)