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Q6IRB5

- Q6IRB5_XENLA

UniProt

Q6IRB5 - Q6IRB5_XENLA

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Protein
Submitted name: MGC78846 protein
Gene
dgcr8, MGC78846
Organism
Xenopus laevis (African clawed frog)
Status
Unreviewed - Annotation score: 1 out of 5 - Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Submitted name:
MGC78846 proteinImported
Gene namesi
Name:dgcr8Imported
Synonyms:MGC78846Imported
OrganismiXenopus laevis (African clawed frog)Imported
Taxonomic identifieri8355 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiAmphibiaBatrachiaAnuraPipoideaPipidaeXenopodinaeXenopusXenopus

Organism-specific databases

XenbaseiXB-GENE-976038. dgcr8.

Structurei

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4E5RX-ray1.90A300-355[»]
ProteinModelPortaliQ6IRB5.
SMRiQ6IRB5. Positions 491-700.

Family & Domainsi

Phylogenomic databases

HOVERGENiHBG051344.

Family and domain databases

Gene3Di3.30.160.20. 1 hit.
InterProiIPR014720. dsRNA-bd_dom.
IPR001202. WW_dom.
[Graphical view]
PfamiPF00035. dsrm. 2 hits.
[Graphical view]
SMARTiSM00358. DSRM. 2 hits.
SM00456. WW. 1 hit.
[Graphical view]
SUPFAMiSSF51045. SSF51045. 1 hit.
PROSITEiPS50137. DS_RBD. 1 hit.
PS50020. WW_DOMAIN_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q6IRB5-1 [UniParc]FASTAAdd to Basket

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MEECEEVAPF PEVNGHDVTE MNPASPPPLP PEEEPPPPPL QTSSDAEVMD    50
VGSGGDGQSQ TPAGDLQQNN GLQLFTKGST SYKSHRTVLD PFHSDQSPRT 100
ARHAPSNKRF TPDLKLLKDV KVSVSFTESC RSKDRHVLYT GLECEGSLHG 150
GSNMNSVNGD MYVCPFAGSS NGNVTDSIEI TLKKNYEPEI EQEKKVEYAV 200
LDELEDFTEN VMDVDEDGAE FVSESILQRE KIDEEALIYS YEDEFDNDVD 250
ALLEESLHTP KKRRIDEKYD IDSDHQSDGE SSVQPMVTKI KTVLKSRGRP 300
PTEPLPDGWI MTFHNSGLPV YLHRETRVVT WSRPYFLGTG SIRKHDPPIS 350
SIPCLHYKKM KDNDIKEQSN DVTSALVSVS SSTKSSDTSH NSEEPDTTAA 400
DSFVSDERES VSEVAQGALG QVKAKVEVCK DESINLEDFR SYLEKRFDFE 450
QVTVKKFRTW AERRQFNREM KRKQAECERP ILPANQKLIT LSVQDAPTKK 500
EFVINPNGKS EVCILHEYMQ RVLKVRPVYN FFECENPSEP FGASVIINGV 550
TYGTGTASSK KLAKNKAARA TLEILIPDFV KQTCIEKPKD TDELEYFNHI 600
SIEDSRVYEL TNKAGLLSPY QILHECLKRN HGMGDTSIKF EVIPGKNQKS 650
EYVMTCGKHT VRGWCKNKRV GKQLASQKIL QLLHPHVKNW GSLLRMYGRE 700
NSKIVKQETA DKSVIELQQF AKKNKPNLHI LNKLQEEMRR LAQEREETRK 750
KPKMTIVESA QPGSEPLCTV DV 772
Length:772
Mass (Da):87,193
Last modified:July 5, 2004 - v1
Checksum:i4E80583B7E05BA29
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BC070985 mRNA. Translation: AAH70985.1.
RefSeqiNP_001085043.1. NM_001091574.1.
UniGeneiXl.19878.

Genome annotation databases

GeneIDi432110.
KEGGixla:432110.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BC070985 mRNA. Translation: AAH70985.1 .
RefSeqi NP_001085043.1. NM_001091574.1.
UniGenei Xl.19878.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
4E5R X-ray 1.90 A 300-355 [» ]
ProteinModelPortali Q6IRB5.
SMRi Q6IRB5. Positions 491-700.
ModBasei Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 432110.
KEGGi xla:432110.

Organism-specific databases

CTDi 54487.
Xenbasei XB-GENE-976038. dgcr8.

Phylogenomic databases

HOVERGENi HBG051344.

Family and domain databases

Gene3Di 3.30.160.20. 1 hit.
InterProi IPR014720. dsRNA-bd_dom.
IPR001202. WW_dom.
[Graphical view ]
Pfami PF00035. dsrm. 2 hits.
[Graphical view ]
SMARTi SM00358. DSRM. 2 hits.
SM00456. WW. 1 hit.
[Graphical view ]
SUPFAMi SSF51045. SSF51045. 1 hit.
PROSITEi PS50137. DS_RBD. 1 hit.
PS50020. WW_DOMAIN_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. NIH - Xenopus Gene Collection (XGC) project
    Submitted (MAY-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: EmbryoImported.
  2. "Dimerization and heme binding are conserved in amphibian and starfish homologues of the microRNA processing protein DGCR8."
    Senturia R., Laganowsky A., Barr I., Scheidemantle B.D., Guo F.
    PLoS ONE 7:e39688-e39688(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (1.90 ANGSTROMS) OF 300-355.

Entry informationi

Entry nameiQ6IRB5_XENLA
AccessioniPrimary (citable) accession number: Q6IRB5
Entry historyi
Integrated into UniProtKB/TrEMBL: July 5, 2004
Last sequence update: July 5, 2004
Last modified: October 16, 2013
This is version 48 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureImported

External Data

Dasty 3

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