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Q6IRB5

- Q6IRB5_XENLA

UniProt

Q6IRB5 - Q6IRB5_XENLA

Protein
Submitted name:

MGC78846 protein

Gene

dgcr8

Organism
Xenopus laevis (African clawed frog)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 49 (01 Oct 2014)
      Sequence version 1 (05 Jul 2004)
      Previous versions | rss
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    Names & Taxonomyi

    Protein namesi
    Submitted name:
    MGC78846 proteinImported
    Gene namesi
    Name:dgcr8Imported
    Synonyms:MGC78846Imported
    OrganismiXenopus laevis (African clawed frog)Imported
    Taxonomic identifieri8355 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiAmphibiaBatrachiaAnuraPipoideaPipidaeXenopodinaeXenopusXenopus

    Organism-specific databases

    XenbaseiXB-GENE-976038. dgcr8.

    Structurei

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    4E5RX-ray1.90A300-355[»]
    ProteinModelPortaliQ6IRB5.
    SMRiQ6IRB5. Positions 491-700.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    HOVERGENiHBG051344.
    KOiK18419.

    Family and domain databases

    Gene3Di3.30.160.20. 1 hit.
    InterProiIPR014720. dsRNA-bd_dom.
    IPR001202. WW_dom.
    [Graphical view]
    PfamiPF00035. dsrm. 2 hits.
    [Graphical view]
    SMARTiSM00358. DSRM. 2 hits.
    SM00456. WW. 1 hit.
    [Graphical view]
    SUPFAMiSSF51045. SSF51045. 1 hit.
    PROSITEiPS50137. DS_RBD. 1 hit.
    PS50020. WW_DOMAIN_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q6IRB5-1 [UniParc]FASTAAdd to Basket

    « Hide

    MEECEEVAPF PEVNGHDVTE MNPASPPPLP PEEEPPPPPL QTSSDAEVMD    50
    VGSGGDGQSQ TPAGDLQQNN GLQLFTKGST SYKSHRTVLD PFHSDQSPRT 100
    ARHAPSNKRF TPDLKLLKDV KVSVSFTESC RSKDRHVLYT GLECEGSLHG 150
    GSNMNSVNGD MYVCPFAGSS NGNVTDSIEI TLKKNYEPEI EQEKKVEYAV 200
    LDELEDFTEN VMDVDEDGAE FVSESILQRE KIDEEALIYS YEDEFDNDVD 250
    ALLEESLHTP KKRRIDEKYD IDSDHQSDGE SSVQPMVTKI KTVLKSRGRP 300
    PTEPLPDGWI MTFHNSGLPV YLHRETRVVT WSRPYFLGTG SIRKHDPPIS 350
    SIPCLHYKKM KDNDIKEQSN DVTSALVSVS SSTKSSDTSH NSEEPDTTAA 400
    DSFVSDERES VSEVAQGALG QVKAKVEVCK DESINLEDFR SYLEKRFDFE 450
    QVTVKKFRTW AERRQFNREM KRKQAECERP ILPANQKLIT LSVQDAPTKK 500
    EFVINPNGKS EVCILHEYMQ RVLKVRPVYN FFECENPSEP FGASVIINGV 550
    TYGTGTASSK KLAKNKAARA TLEILIPDFV KQTCIEKPKD TDELEYFNHI 600
    SIEDSRVYEL TNKAGLLSPY QILHECLKRN HGMGDTSIKF EVIPGKNQKS 650
    EYVMTCGKHT VRGWCKNKRV GKQLASQKIL QLLHPHVKNW GSLLRMYGRE 700
    NSKIVKQETA DKSVIELQQF AKKNKPNLHI LNKLQEEMRR LAQEREETRK 750
    KPKMTIVESA QPGSEPLCTV DV 772
    Length:772
    Mass (Da):87,193
    Last modified:July 5, 2004 - v1
    Checksum:i4E80583B7E05BA29
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BC070985 mRNA. Translation: AAH70985.1.
    RefSeqiNP_001085043.1. NM_001091574.1.
    UniGeneiXl.19878.

    Genome annotation databases

    GeneIDi432110.
    KEGGixla:432110.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BC070985 mRNA. Translation: AAH70985.1 .
    RefSeqi NP_001085043.1. NM_001091574.1.
    UniGenei Xl.19878.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    4E5R X-ray 1.90 A 300-355 [» ]
    ProteinModelPortali Q6IRB5.
    SMRi Q6IRB5. Positions 491-700.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 432110.
    KEGGi xla:432110.

    Organism-specific databases

    CTDi 54487.
    Xenbasei XB-GENE-976038. dgcr8.

    Phylogenomic databases

    HOVERGENi HBG051344.
    KOi K18419.

    Family and domain databases

    Gene3Di 3.30.160.20. 1 hit.
    InterProi IPR014720. dsRNA-bd_dom.
    IPR001202. WW_dom.
    [Graphical view ]
    Pfami PF00035. dsrm. 2 hits.
    [Graphical view ]
    SMARTi SM00358. DSRM. 2 hits.
    SM00456. WW. 1 hit.
    [Graphical view ]
    SUPFAMi SSF51045. SSF51045. 1 hit.
    PROSITEi PS50137. DS_RBD. 1 hit.
    PS50020. WW_DOMAIN_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. NIH - Xenopus Gene Collection (XGC) project
      Submitted (MAY-2004) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Tissue: EmbryoImported.
    2. "Dimerization and heme binding are conserved in amphibian and starfish homologues of the microRNA processing protein DGCR8."
      Senturia R., Laganowsky A., Barr I., Scheidemantle B.D., Guo F.
      PLoS ONE 7:e39688-e39688(2012) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (1.90 ANGSTROMS) OF 300-355.

    Entry informationi

    Entry nameiQ6IRB5_XENLA
    AccessioniPrimary (citable) accession number: Q6IRB5
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 5, 2004
    Last sequence update: July 5, 2004
    Last modified: October 1, 2014
    This is version 49 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    3D-structureImported

    External Data

    Dasty 3