Q6IQI6 (Q6IQI6_DANRE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
60S ribosomal protein L11 EMBL AAT68159.1

Submitted name:
Ribosomal protein L11 EMBL AAH71420.1 Ensembl ENSDARP00000063869

Gene names

Name:	rpl11 EMBL AAH71420.1 Ensembl ENSDARP00000063869 ZFIN ZDB-GENE-040625-147
ORF Names:	zgc:86748 ZFIN ZDB-GENE-040625-147

Organism

Danio rerio (Zebrafish) (Brachydanio rerio) EMBL AAH71420.1

Taxonomic identifier

7955 [NCBI]

Taxonomic lineage

Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Actinopterygii › Neopterygii › Teleostei › Ostariophysi › Cypriniformes › Cyprinidae › Danio

Protein attributes

Sequence length	178 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Sequence similarities

Belongs to the ribosomal protein L5P family. RuleBase RU003930

Ontologies

Keywords
Molecular function	Ribonucleoprotein Ribosomal protein RuleBase RU003930 EMBL AAH71420.1
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	embryo development Inferred from mutant phenotype. Source: ZFIN erythrocyte differentiation Inferred from mutant phenotype. Source: ZFIN glucose homeostasis Inferred from mutant phenotype. Source: ZFIN induction of apoptosis Inferred from mutant phenotype. Source: ZFIN translation Inferred from electronic annotation. Source: InterPro
Cellular component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q6IQI6 [UniParc]. Last modified July 5, 2004. Version 1. Checksum: 621E278ACEB2256F	FASTA	178	20,377
	10 20 30 40 50 60 MADQSEKKEN PMRELRIRKL CLNICVGESG DRLTRAAKVL EQLTGQTPVF SKARYTVRSF 70 80 90 100 110 120 GIRRNEKIAV HCTVRGAKAE EILEKGLKVR EYELRKNNFS DTGNFGFGIQ EHIDLGIKYD 130 140 150 160 170 PSIGIYGLDF YVVLGRPGFS IADKKRKTGR IGAKHRIRKE EAMRWFQQKY DGIILPGK

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Identification of 315 genes essential for early zebrafish development." Amsterdam A., Nissen R.M., Sun Z., Swindell E.C., Farrington S., Hopkins N. Proc. Natl. Acad. Sci. U.S.A. 101:12792-12797(2004) [PubMed: 15256591] [Abstract] Cited for: NUCLEOTIDE SEQUENCE.
[2]	NIH - Zebrafish Gene Collection (ZGC) project Submitted (JUN-2004) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Tissue: Embryo EMBL AAH71420.1.
[3]	"The genomic sequence of Danio rerio." The Danio rerio Sequencing Project at the Sanger Institute Submitted (JUL-2010) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Tuebingen Ensembl ENSDARP00000063869.
[4]	Ensembl Submitted (JUL-2011) to UniProtKB Cited for: IDENTIFICATION. Strain: Tuebingen Ensembl ENSDARP00000063869.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CABZ01086825 Genomic DNA. No translation available. BC071420 mRNA. Translation: AAH71420.1. AY648841 mRNA. Translation: AAT68159.1.
IPI	IPI00492905.
RefSeq	NP_001002139.1. NM_001002139.1.
UniGene	Dr.32573.
3D structure databases
ProteinModelPortal	Q6IQI6.
SMR	Q6IQI6. Positions 10-174.
ModBase	Search...
Protein-protein interaction databases
STRING	Q6IQI6.
Proteomic databases
PRIDE	Q6IQI6.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
Ensembl	ENSDART00000063870; ENSDARP00000063869; ENSDARG00000043509.
GeneID	415229.
KEGG	dre:415229.
Organism-specific databases
CTD	6135.
ZFIN	ZDB-GENE-040625-147. rpl11.
Phylogenomic databases
eggNOG	fiNOG10278.
GeneTree	ENSGT00390000013411.
HOGENOM	HBG592167.
HOVERGEN	HBG055214.
InParanoid	Q6IQI6.
OMA	ETGNFGF.
OrthoDB	EOG4BG8X4.
PhylomeDB	Q6IQI6.
Gene expression databases
ArrayExpress	Q6IQI6.
Bgee	Q6IQI6.
Family and domain databases
InterPro	IPR002132. Ribosomal_L5. IPR020929. Ribosomal_L5_CS. IPR022803. Ribosomal_L5_domain. [Graphical view]
Gene3D	G3DSA:3.30.1440.10. Ribosomal_L5. 1 hit.
KO	K02868.
PANTHER	PTHR11994. Ribosomal_L5. 1 hit.
Pfam	PF00281. Ribosomal_L5. 1 hit. PF00673. Ribosomal_L5_C. 1 hit. [Graphical view]
PIRSF	PIRSF002161. Ribosomal_L5. 1 hit.
SUPFAM	SSF55282. Ribosomal_L5. 1 hit.
PROSITE	PS00358. RIBOSOMAL_L5. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q6IQI6_DANRE

Accession

Primary (citable) accession number: Q6IQI6

Entry history

Integrated into UniProtKB/TrEMBL:	July 5, 2004
Last sequence update:	July 5, 2004
Last modified:	January 25, 2012
This is version 58 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)