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Protein
Submitted name:

General transcription factor IIA, 1

Gene

gtf2a1

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
General transcription factor IIA, 1Imported
Gene namesi
Name:gtf2a1Imported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio

Organism-specific databases

ZFINiZDB-GENE-030131-2694. gtf2a1.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Proteomic databases

PaxDbiQ6IQ82.
PRIDEiQ6IQ82.

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000015974.

Structurei

3D structure databases

ProteinModelPortaliQ6IQ82.
SMRiQ6IQ82. Positions 10-51, 323-369.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiKOG2652. Eukaryota.
ENOG4111M8K. LUCA.
HOVERGENiHBG052771.

Family and domain databases

Gene3Di1.10.287.100. 1 hit.
2.30.18.10. 1 hit.
InterProiIPR009083. TFIIA_a-hlx.
IPR004855. TFIIA_asu/bsu.
IPR013028. TFIIA_asu_N.
IPR009088. TFIIA_b-brl.
[Graphical view]
PANTHERiPTHR12694. PTHR12694. 1 hit.
PfamiPF03153. TFIIA. 2 hits.
[Graphical view]
SMARTiSM01371. TFIIA. 1 hit.
[Graphical view]
SUPFAMiSSF47396. SSF47396. 1 hit.
SSF50784. SSF50784. 1 hit.

Sequencei

Sequence statusi: Complete.

Q6IQ82-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASSANSSQV PKLYRSVMED VIAEVRELFL DEGVDEQVLM ELKTLWESKL
60 70 80 90 100
MQSKAVDGFH TEEQQVLHAQ QQQAQAQQTQ QQTQPQQVLL PPAQTTPQQQ
110 120 130 140 150
VIVQDAKIMQ HMSATGMSAA ATAATLALPT GVAPFQQLIT PQGQILQVVR
160 170 180 190 200
AANGAQYIIQ PQQQMLLQQQ VLPQMQPGGV QAPVIQQVLT PLQGGLPQQT
210 220 230 240 250
GVIIQPQQIV LTGNKVPQNT QVMQAAAMAV QSGPGDAQVQ TQPQAQQQQQ
260 270 280 290 300
QQQQQASQQP PMMLQVDGAG DTSSEEDEEE EDEYDEDEDE DKEKDGGEDG
310 320 330 340 350
QVEEEPLNSG DDVSDEEDQE LFDTENVVVC QYDKIHRSKN KWKFHLKDGI
360
MNLNGRDFVF SKAIGDAEW
Length:369
Mass (Da):40,789
Last modified:July 5, 2004 - v1
Checksum:i71D309EB72E0E279
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC071528 mRNA. Translation: AAH71528.1.
UniGeneiDr.78440.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC071528 mRNA. Translation: AAH71528.1.
UniGeneiDr.78440.

3D structure databases

ProteinModelPortaliQ6IQ82.
SMRiQ6IQ82. Positions 10-51, 323-369.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi7955.ENSDARP00000015974.

Proteomic databases

PaxDbiQ6IQ82.
PRIDEiQ6IQ82.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Organism-specific databases

ZFINiZDB-GENE-030131-2694. gtf2a1.

Phylogenomic databases

eggNOGiKOG2652. Eukaryota.
ENOG4111M8K. LUCA.
HOVERGENiHBG052771.

Family and domain databases

Gene3Di1.10.287.100. 1 hit.
2.30.18.10. 1 hit.
InterProiIPR009083. TFIIA_a-hlx.
IPR004855. TFIIA_asu/bsu.
IPR013028. TFIIA_asu_N.
IPR009088. TFIIA_b-brl.
[Graphical view]
PANTHERiPTHR12694. PTHR12694. 1 hit.
PfamiPF03153. TFIIA. 2 hits.
[Graphical view]
SMARTiSM01371. TFIIA. 1 hit.
[Graphical view]
SUPFAMiSSF47396. SSF47396. 1 hit.
SSF50784. SSF50784. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. NIH - Zebrafish Gene Collection (ZGC) project
    Submitted (JUN-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: EmbryoImported.

Entry informationi

Entry nameiQ6IQ82_DANRE
AccessioniPrimary (citable) accession number: Q6IQ82
Entry historyi
Integrated into UniProtKB/TrEMBL: July 5, 2004
Last sequence update: July 5, 2004
Last modified: May 11, 2016
This is version 67 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.