Q6IN85 (P4R3A_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
April 3, 2013.
Version 88.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Serine/threonine-protein phosphatase 4 regulatory subunit 3A Alternative name(s): SMEK homolog 1 | ||||||
| Gene names |
| ||||||
| Organism | Homo sapiens (Human) [Reference proteome] | ||||||
| Taxonomic identifier | 9606 [NCBI] | ||||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 833 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Regulatory subunit of serine/threonine-protein phosphatase 4. May regulate the activity of PPP4C at centrosomal microtubule organizing centers. The PPP4C-PPP4R2-PPP4R3A PP4 complex specifically dephosphorylates H2AFX phosphorylated on 'Ser-140' (gamma-H2AFX) generated during DNA replication and required for DNA DSB repair. Ref.10 |
| Subunit structure | Serine/threonine-protein phosphatase 4 (PP4) occurs in different assemblies of the catalytic and one or more regulatory subunits. Component of the PP4 complex PPP4C-PPP4R2-PPP4R3A. Interacts with PPP4C; the interaction requires PPP4R2. Ref.8 Ref.10 |
| Subcellular location | Cytoplasm. Cytoplasm › cytoskeleton › centrosome. Nucleus. Note: In interphase localized in the cytoplasm and in the nucleus (with higher levels). During metaphase located in pericentriolar regions. Ref.9 |
| Sequence similarities | Belongs to the SMEK family. Contains 1 WH1 domain. |
| Sequence caution | The sequence AAG39284.1 differs from that shown. Reason: Erroneous translation. Wrong choice of frame. The sequence BAA91960.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended. The sequence BAA91960.1 differs from that shown. Reason: Probable intron retention. The sequence BAB14877.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended. The sequence BAC23106.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened. |
Ontologies
| Keywords | |
|---|---|
| Cellular component | Cytoplasm Cytoskeleton Nucleus |
| Coding sequence diversity | Alternative splicing |
| PTM | Acetylation Phosphoprotein |
| Technical term | Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Biological_process | positive regulation of gluconeogenesis Inferred from electronic annotation. Source: Compara protein dephosphorylationInferred from electronic annotation. Source: Compara |
| Cellular_component | cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell microtubule organizing centerInferred from electronic annotation. Source: UniProtKB-SubCell nucleusInferred from electronic annotation. Source: UniProtKB-SubCell protein phosphatase 4 complexInferred from electronic annotation. Source: Compara |
| Complete GO annotation... | |
Alternative products
| This entry describes 4 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q6IN85-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Note: No experimental confirmation available. | ||||||
| Isoform 2 (identifier: Q6IN85-2) The sequence of this isoform differs from the canonical sequence as follows: 410-422: Missing. | ||||||
| Note: No experimental confirmation available. | ||||||
| Isoform 4 (identifier: Q6IN85-4) The sequence of this isoform differs from the canonical sequence as follows: 67-305: Missing. | ||||||
| Note: No experimental confirmation available. | ||||||
| Isoform 5 (identifier: Q6IN85-5) The sequence of this isoform differs from the canonical sequence as follows: 410-422: Missing. 554-833: Missing. | ||||||
| Note: No experimental confirmation available. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 833 | 833 | Serine/threonine-protein phosphatase 4 regulatory subunit 3A | PRO_0000254598 | |||||
Regions | |||||||||
| Domain | 1 – 100 | 100 | WH1 | ||||||
Amino acid modifications | |||||||||
| Modified residue | 117 | 1 | Phosphoserine Ref.11 | ||||||
| Modified residue | 655 | 1 | N6-acetyllysine Ref.13 | ||||||
| Modified residue | 741 | 1 | Phosphoserine Ref.15 | ||||||
| Modified residue | 771 | 1 | Phosphoserine Ref.11 Ref.12 | ||||||
| Modified residue | 774 | 1 | Phosphoserine Ref.12 | ||||||
| Modified residue | 777 | 1 | Phosphoserine Ref.12 | ||||||
Natural variations | |||||||||
| Alternative sequence | 67 – 305 | 239 | Missing in isoform 4. | VSP_021252 | |||||
| Alternative sequence | 410 – 422 | 13 | Missing in isoform 2 and isoform 5. | VSP_021253 | |||||
| Alternative sequence | 554 – 833 | 280 | Missing in isoform 5. | VSP_021256 | |||||
Sequences
| ||||||||||||||||||||||||||||||||||||
References
| « Hide 'large scale' references | |
| [1] | "The nucleotide sequence of a long cDNA clone isolated from human." Nagase T., Kikuno R., Ohara O. Submitted (NOV-2002) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2). Tissue: Brain. |
| [2] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 5), NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 98-833 (ISOFORM 2), NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 165-422 (ISOFORM 1). Tissue: Ileal mucosa and Placenta. |
| [3] | "The DNA sequence and analysis of human chromosome 14." Heilig R., Eckenberg R., Petit J.-L., Fonknechten N., Da Silva C., Cattolico L., Levy M., Barbe V., De Berardinis V., Ureta-Vidal A., Pelletier E., Vico V., Anthouard V., Rowen L., Madan A., Qin S., Sun H., Du H. Weissenbach J.Nature 421:601-607(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [4] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 4). Tissue: Eye. |
| [5] | "Full-length cDNA libraries and normalization." Li W.B., Gruber C., Jessee J., Polayes D. Submitted (FEB-2003) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 238-833. Tissue: Neuroblastoma. |
| [6] | "The full-ORF clone resource of the German cDNA consortium." Bechtel S., Rosenfelder H., Duda A., Schmidt C.P., Ernst U., Wellenreuther R., Mehrle A., Schuster C., Bahr A., Bloecker H., Heubner D., Hoerlein A., Michel G., Wedler H., Koehrer K., Ottenwaelder B., Poustka A., Wiemann S., Schupp I. BMC Genomics 8:399-399(2007) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 667-833. Tissue: Melanoma. |
| [7] | Liu B., Liu Y.Q., Wang X.Y., Zhao B., Sheng H., Zhao X.W., Liu S., Xu Y.Y., Ye J., Song L., Gao Y., Zhang C.L., Zhang J., Wei Y.J., Cao H.Q., Zhao Y., Liu L.S., Ding J.F. Hui R.T.Submitted (DEC-1998) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 808-833. Tissue: Aorta. |
| [8] | "A novel, evolutionarily conserved protein phosphatase complex involved in cisplatin sensitivity." Gingras A.-C., Caballero M., Zarske M., Sanchez A., Hazbun T.R., Fields S., Sonenberg N., Hafen E., Raught B., Aebersold R. Mol. Cell. Proteomics 4:1725-1740(2005) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION IN THE PPP4C-PPP4R2-PPP4R3A COMPLEX, INTERACTION WITH PPP4C, MASS SPECTROMETRY. |
| [9] | "Depletion of protein phosphatase 4 in human cells reveals essential roles in centrosome maturation, cell migration and the regulation of Rho GTPases." Martin-Granados C., Philp A., Oxenham S.K., Prescott A.R., Cohen P.T.W. Int. J. Biochem. Cell Biol. 40:2315-2332(2008) [PubMed] [Europe PMC] [Abstract] Cited for: SUBCELLULAR LOCATION. |
| [10] | "A PP4-phosphatase complex dephosphorylates gamma-H2AX generated during DNA replication." Chowdhury D., Xu X., Zhong X., Ahmed F., Zhong J., Liao J., Dykxhoorn D.M., Weinstock D.M., Pfeifer G.P., Lieberman J. Mol. Cell 31:33-46(2008) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION IN THE PPP4C-PPP4R2-PPP4R3A COMPLEX, FUNCTION OF THE PPP4C-PPP4R2-PPP4R3A COMPLEX. |
| [11] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-117 AND SER-771, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [12] | "Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions." Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K., Rodionov V., Han D.K. Sci. Signal. 2:RA46-RA46(2009) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-771; SER-774 AND SER-777, MASS SPECTROMETRY. Tissue: Leukemic T-cell. |
| [13] | "Lysine acetylation targets protein complexes and co-regulates major cellular functions." Choudhary C., Kumar C., Gnad F., Nielsen M.L., Rehman M., Walther T.C., Olsen J.V., Mann M. Science 325:834-840(2009) [PubMed] [Europe PMC] [Abstract] Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT LYS-655, MASS SPECTROMETRY. |
| [14] | "Initial characterization of the human central proteome." Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J. BMC Syst. Biol. 5:17-17(2011) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. |
| [15] | "System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation." Rigbolt K.T., Prokhorova T.A., Akimov V., Henningsen J., Johansen P.T., Kratchmarova I., Kassem M., Mann M., Olsen J.V., Blagoev B. Sci. Signal. 4:RS3-RS3(2011) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-741, MASS SPECTROMETRY. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AB095930 mRNA. Translation: BAC23106.1. Different initiation. AK000714 mRNA. Translation: BAA91338.1. AK001885 mRNA. Translation: BAA91960.1. Sequence problems. AK024297 mRNA. Translation: BAB14877.1. Different initiation. AL133153 Genomic DNA. No translation available. BC038932 mRNA. Translation: AAH38932.1. BC072409 mRNA. Translation: AAH72409.1. BX248247 mRNA. Translation: CAD62575.1. AL832921 mRNA. Translation: CAH10634.1. AF113213 mRNA. Translation: AAG39284.1. Sequence problems. |
| IPI | IPI00017290. IPI00217013. IPI00384714. IPI00479778. |
| RefSeq | NP_115949.3. NM_032560.4. |
| UniGene | Hs.533887. |
3D structure databases | |
| ProteinModelPortal | Q6IN85. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | Q6IN85. 4 interactions. |
PTM databases | |
| PhosphoSite | Q6IN85. |
Polymorphism databases | |
| DMDM | 74736507. |
Proteomic databases | |
| PaxDb | Q6IN85. |
| PRIDE | Q6IN85. |
Protocols and materials databases | |
| DNASU | 55671. |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000337238; ENSP00000337125; ENSG00000100796. ENST00000428424; ENSP00000392704; ENSG00000100796. ENST00000554684; ENSP00000450864; ENSG00000100796. ENST00000554943; ENSP00000450883; ENSG00000100796. ENST00000555462; ENSP00000450891; ENSG00000100796. |
| GeneID | 55671. |
| KEGG | hsa:55671. |
| UCSC | uc001xzm.3. human. uc001xzn.3. human. uc001xzq.1. human. uc010atz.3. human. |
Organism-specific databases | |
| CTD | 55671. |
| GeneCards | GC14M091923. |
| H-InvDB | HIX0202046. |
| HGNC | HGNC:20219. SMEK1. |
| HPA | HPA002568. |
| MIM | 610351. gene. |
| neXtProt | NX_Q6IN85. |
| PharmGKB | PA162403940. |
| HUGE | Search... |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | NOG314899. |
| HOVERGEN | HBG056624. |
| InParanoid | Q6IN85. |
| OMA | LRFMRKI. |
Gene expression databases | |
| ArrayExpress | Q6IN85. |
| Bgee | Q6IN85. |
| Genevestigator | Q6IN85. |
| GermOnline | ENSG00000100796. Homo sapiens. |
Family and domain databases | |
| Gene3D | 2.30.29.30. 1 hit. |
| InterPro | IPR016024. ARM-type_fold. IPR006887. DUF625. IPR011993. PH_like_dom. [Graphical view] |
| Pfam | PF04802. SMK-1. 1 hit. [Graphical view] |
| SUPFAM | SSF48371. ARM-type_fold. 1 hit. |
| PROSITE | PS50229. WH1. False negative. [Graphical view] |
| ProtoNet | Search... |
Other | |
| ChiTaRS | SMEK1. human. |
| GenomeRNAi | 55671. |
| NextBio | 60444. |
| SOURCE | Search... |
Entry information
| Entry name | P4R3A_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q6IN85 Secondary accession number(s): Q69YK6 Q9NWP1 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 14 Human chromosome 14: entries, gene names and cross-references to MIM |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with
