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Q6IN42

- Q6IN42_RAT

UniProt

Q6IN42 - Q6IN42_RAT

Protein
Submitted name:

Grn protein

Gene

Grn

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 52 (01 Oct 2014)
      Sequence version 1 (05 Jul 2004)
      Previous versions | rss
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    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Grn proteinImported
    Gene namesi
    Name:GrnImported
    OrganismiRattus norvegicus (Rat)Imported
    Taxonomic identifieri10116 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

    Organism-specific databases

    RGDi61983. Grn.

    PTM / Processingi

    Proteomic databases

    PRIDEiQ6IN42.

    Expressioni

    Gene expression databases

    ArrayExpressiQ6IN42.
    GenevestigatoriQ6IN42.

    Structurei

    3D structure databases

    ProteinModelPortaliQ6IN42.
    SMRiQ6IN42. Positions 122-153, 205-235, 279-334.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000067856.
    HOVERGENiHBG000845.

    Family and domain databases

    InterProiIPR006150. Cys_repeat_1.
    IPR000118. Granulin.
    [Graphical view]
    PfamiPF00396. Granulin. 6 hits.
    [Graphical view]
    SMARTiSM00277. GRAN. 6 hits.
    SM00289. WR1. 4 hits.
    [Graphical view]
    PROSITEiPS00799. GRANULINS. 6 hits.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q6IN42-1 [UniParc]FASTAAdd to Basket

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    MWILVSWLAL VARLVAGTQC PDGQFCPVAC CLDQGGANYS CCNPLLDTWP    50
    IITSRRLDGS CQIRDHCPDG YSCLLTVSGT SSCCPFSEGV SCDDGQHCCP 100
    RGFHCSVDGK SCSQISDSLL GAVQCPGSQF ECPDSATCCI MIDGSWGCCP 150
    MPQASCCEDR VHCCPHGASC DLVHTRCISP TGTHPLLKKF PAQRTNRAVA 200
    FPFSVVCPDA KTQCPDDSTC CELPTGKYGC CPMPNAICCS DHLHCCPQDT 250
    VCDLIQSKCI SKDYTTDLMT KLPGYPVNEV KCDLEVSCPD GYTCCRLNTG 300
    AWGCCPFTKA VCCEDHIHCC PAGFQCHTET GTCELGVLQV PWMKKVTASL 350
    SLPDPQILKN DVPCDDFSSC PSNNTCCRLS SGDWGCCPIP EAVCCEDRQH 400
    CCPAGYTCNV KARTCEKDAG SVQPSMDLTF GSKVGNVECG AGHFCHDNQS 450
    CCKDSQGGWA CCPYVKGVCC RDGRHCCPIG FHCSAKGTKC LRKKTPRWDI 500
    LLRDPAPRPL L 511
    Length:511
    Mass (Da):55,030
    Last modified:July 5, 2004 - v1
    Checksum:i56E112233F2FC75F
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BC072469 mRNA. Translation: AAH72469.1.
    RefSeqiNP_001139314.1. NM_001145842.1.
    NP_058809.2. NM_017113.2.
    UniGeneiRn.5820.

    Genome annotation databases

    GeneIDi29143.
    KEGGirno:29143.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BC072469 mRNA. Translation: AAH72469.1 .
    RefSeqi NP_001139314.1. NM_001145842.1.
    NP_058809.2. NM_017113.2.
    UniGenei Rn.5820.

    3D structure databases

    ProteinModelPortali Q6IN42.
    SMRi Q6IN42. Positions 122-153, 205-235, 279-334.
    ModBasei Search...
    MobiDBi Search...

    Proteomic databases

    PRIDEi Q6IN42.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 29143.
    KEGGi rno:29143.

    Organism-specific databases

    CTDi 2896.
    RGDi 61983. Grn.

    Phylogenomic databases

    HOGENOMi HOG000067856.
    HOVERGENi HBG000845.

    Miscellaneous databases

    NextBioi 608123.

    Gene expression databases

    ArrayExpressi Q6IN42.
    Genevestigatori Q6IN42.

    Family and domain databases

    InterProi IPR006150. Cys_repeat_1.
    IPR000118. Granulin.
    [Graphical view ]
    Pfami PF00396. Granulin. 6 hits.
    [Graphical view ]
    SMARTi SM00277. GRAN. 6 hits.
    SM00289. WR1. 4 hits.
    [Graphical view ]
    PROSITEi PS00799. GRANULINS. 6 hits.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
      The MGC Project Team
      Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
      , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
      Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Tissue: LungImported.

    Entry informationi

    Entry nameiQ6IN42_RAT
    AccessioniPrimary (citable) accession number: Q6IN42
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 5, 2004
    Last sequence update: July 5, 2004
    Last modified: October 1, 2014
    This is version 52 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)