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Protein
Submitted name:

Grn protein

Gene

Grn

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Submitted name:
Grn proteinImported
Gene namesi
Name:GrnImported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Organism-specific databases

RGDi61983. Grn.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 1717Sequence analysisAdd
BLAST
Chaini18 – 511494Sequence analysisPRO_5004275879Add
BLAST

Proteomic databases

PRIDEiQ6IN42.

Expressioni

Gene expression databases

GenevisibleiQ6IN42. RN.

Structurei

3D structure databases

ProteinModelPortaliQ6IN42.
SMRiQ6IN42. Positions 122-153, 205-235, 279-334.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini92 – 10514GRANULINSInterPro annotationAdd
BLAST
Domaini157 – 17014GRANULINSInterPro annotationAdd
BLAST
Domaini239 – 25214GRANULINSInterPro annotationAdd
BLAST
Domaini313 – 32614GRANULINSInterPro annotationAdd
BLAST
Domaini395 – 40814GRANULINSInterPro annotationAdd
BLAST
Domaini470 – 48314GRANULINSInterPro annotationAdd
BLAST

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

HOGENOMiHOG000067856.
HOVERGENiHBG000845.

Family and domain databases

InterProiIPR000118. Granulin.
[Graphical view]
PfamiPF00396. Granulin. 6 hits.
[Graphical view]
SMARTiSM00277. GRAN. 6 hits.
[Graphical view]
PROSITEiPS00799. GRANULINS. 6 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q6IN42-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MWILVSWLAL VARLVAGTQC PDGQFCPVAC CLDQGGANYS CCNPLLDTWP
60 70 80 90 100
IITSRRLDGS CQIRDHCPDG YSCLLTVSGT SSCCPFSEGV SCDDGQHCCP
110 120 130 140 150
RGFHCSVDGK SCSQISDSLL GAVQCPGSQF ECPDSATCCI MIDGSWGCCP
160 170 180 190 200
MPQASCCEDR VHCCPHGASC DLVHTRCISP TGTHPLLKKF PAQRTNRAVA
210 220 230 240 250
FPFSVVCPDA KTQCPDDSTC CELPTGKYGC CPMPNAICCS DHLHCCPQDT
260 270 280 290 300
VCDLIQSKCI SKDYTTDLMT KLPGYPVNEV KCDLEVSCPD GYTCCRLNTG
310 320 330 340 350
AWGCCPFTKA VCCEDHIHCC PAGFQCHTET GTCELGVLQV PWMKKVTASL
360 370 380 390 400
SLPDPQILKN DVPCDDFSSC PSNNTCCRLS SGDWGCCPIP EAVCCEDRQH
410 420 430 440 450
CCPAGYTCNV KARTCEKDAG SVQPSMDLTF GSKVGNVECG AGHFCHDNQS
460 470 480 490 500
CCKDSQGGWA CCPYVKGVCC RDGRHCCPIG FHCSAKGTKC LRKKTPRWDI
510
LLRDPAPRPL L
Length:511
Mass (Da):55,030
Last modified:July 5, 2004 - v1
Checksum:i56E112233F2FC75F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC072469 mRNA. Translation: AAH72469.1.
RefSeqiNP_001139314.1. NM_001145842.1.
NP_058809.2. NM_017113.2.
UniGeneiRn.5820.

Genome annotation databases

GeneIDi29143.
KEGGirno:29143.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC072469 mRNA. Translation: AAH72469.1.
RefSeqiNP_001139314.1. NM_001145842.1.
NP_058809.2. NM_017113.2.
UniGeneiRn.5820.

3D structure databases

ProteinModelPortaliQ6IN42.
SMRiQ6IN42. Positions 122-153, 205-235, 279-334.
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PRIDEiQ6IN42.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi29143.
KEGGirno:29143.

Organism-specific databases

CTDi2896.
RGDi61983. Grn.

Phylogenomic databases

HOGENOMiHOG000067856.
HOVERGENiHBG000845.

Miscellaneous databases

NextBioi608123.

Gene expression databases

GenevisibleiQ6IN42. RN.

Family and domain databases

InterProiIPR000118. Granulin.
[Graphical view]
PfamiPF00396. Granulin. 6 hits.
[Graphical view]
SMARTiSM00277. GRAN. 6 hits.
[Graphical view]
PROSITEiPS00799. GRANULINS. 6 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
    , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: LungImported.

Entry informationi

Entry nameiQ6IN42_RAT
AccessioniPrimary (citable) accession number: Q6IN42
Entry historyi
Integrated into UniProtKB/TrEMBL: July 5, 2004
Last sequence update: July 5, 2004
Last modified: May 11, 2016
This is version 61 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.