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Q6IN42 (Q6IN42_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified March 19, 2014. Version 51. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length511 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Sequences

Sequence LengthMass (Da)Tools
Q6IN42 [UniParc].

Last modified July 5, 2004. Version 1.
Checksum: 56E112233F2FC75F

FASTA51155,030
        10         20         30         40         50         60 
MWILVSWLAL VARLVAGTQC PDGQFCPVAC CLDQGGANYS CCNPLLDTWP IITSRRLDGS 

        70         80         90        100        110        120 
CQIRDHCPDG YSCLLTVSGT SSCCPFSEGV SCDDGQHCCP RGFHCSVDGK SCSQISDSLL 

       130        140        150        160        170        180 
GAVQCPGSQF ECPDSATCCI MIDGSWGCCP MPQASCCEDR VHCCPHGASC DLVHTRCISP 

       190        200        210        220        230        240 
TGTHPLLKKF PAQRTNRAVA FPFSVVCPDA KTQCPDDSTC CELPTGKYGC CPMPNAICCS 

       250        260        270        280        290        300 
DHLHCCPQDT VCDLIQSKCI SKDYTTDLMT KLPGYPVNEV KCDLEVSCPD GYTCCRLNTG 

       310        320        330        340        350        360 
AWGCCPFTKA VCCEDHIHCC PAGFQCHTET GTCELGVLQV PWMKKVTASL SLPDPQILKN 

       370        380        390        400        410        420 
DVPCDDFSSC PSNNTCCRLS SGDWGCCPIP EAVCCEDRQH CCPAGYTCNV KARTCEKDAG 

       430        440        450        460        470        480 
SVQPSMDLTF GSKVGNVECG AGHFCHDNQS CCKDSQGGWA CCPYVKGVCC RDGRHCCPIG 

       490        500        510 
FHCSAKGTKC LRKKTPRWDI LLRDPAPRPL L 

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References

[1]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M. expand/collapse author list , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Lung EMBL AAH72469.1.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
BC072469 mRNA. Translation: AAH72469.1.
RefSeqNP_001139314.1. NM_001145842.1.
NP_058809.2. NM_017113.2.
UniGeneRn.5820.

3D structure databases

ProteinModelPortalQ6IN42.
SMRQ6IN42. Positions 122-153, 205-235, 279-334.
ModBaseSearch...
MobiDBSearch...

Proteomic databases

PRIDEQ6IN42.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID29143.
KEGGrno:29143.

Organism-specific databases

CTD2896.
RGD61983. Grn.

Phylogenomic databases

HOGENOMHOG000067856.
HOVERGENHBG000845.

Gene expression databases

ArrayExpressQ6IN42.
GenevestigatorQ6IN42.

Family and domain databases

InterProIPR006150. Cys_repeat_1.
IPR000118. Granulin.
[Graphical view]
PfamPF00396. Granulin. 6 hits.
[Graphical view]
SMARTSM00277. GRAN. 6 hits.
SM00289. WR1. 4 hits.
[Graphical view]
PROSITEPS00799. GRANULINS. 6 hits.
[Graphical view]
ProtoNetSearch...

Other

NextBio608123.

Entry information

Entry nameQ6IN42_RAT
AccessionPrimary (citable) accession number: Q6IN42
Entry history
Integrated into UniProtKB/TrEMBL: July 5, 2004
Last sequence update: July 5, 2004
Last modified: March 19, 2014
This is version 51 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)