Skip Header

Contribute Send feedback
Read comments (0) or add your own

Unreviewed, UniProtKB/TrEMBL Q6IN39 (Q6IN39_RAT)

Last modified January 19, 2010. Version 47. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequences · References · Cross-references · Entry information

Hide | Top

Names and origin

Protein namesSubmitted name:
    Hsd17b4 protein EMBL AAH72472.1
Gene names
Name: Hsd17b4 EMBL AAH72472.1 RGD 621806
OrganismRattus norvegicus (Rat) EMBL AAH72472.1
Taxonomic identifier10116 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Hide | Top

Protein attributes

Sequence length751 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level.

Hide | Top

General annotation (Comments)

Sequence similarities

Belongs to the short-chain dehydrogenases/reductases (SDR) family.

Hide | Top

Sequences

Sequence LengthMass (Da)Tools
Q6IN39-1 [UniParc].

Last modified July 5, 2004. Version 1.
Checksum: 5B3C794ED9E77358

FASTA75181,089
        10         20         30         40         50         60 
MASPLRFDGR VVLVTGAGGG LGRAYALAFA ERGALVVVND LGGDFKGVGK GSSAADKVVE 

        70         80         90        100        110        120 
EIRRRGGKAV ANYDSVEAGE KLVKTALDTF GRIDVVVNNA GILRDRSFSR ISDEDWDIIQ 

       130        140        150        160        170        180 
RVHLRGSFQV TRAAWDHMKK QNYGRIIMTA SASGIYGNFG QANYSAAKLG LLGLANTLVI 

       190        200        210        220        230        240 
EGRKNNIHCN TIAPNAGSRM TETVMPEDLV EALKPEYVAP LVLWLCHESC EENGGLFEVG 

       250        260        270        280        290        300 
AGWIGKLRWE RTLGAIVRKR NQPMTPEAVR DNWVKICDFS NASKPKSIQE STGGIIEVLH 

       310        320        330        340        350        360 
KIDSEGISQN HTGQVASADA SGFAGVVGHK LPSFSSSYTE LQCIMYALGV GASVKNPKDL 

       370        380        390        400        410        420 
KFVYEGSADF SCLPTFGVIV AQKSLMSGGL AEVPGLSINF AKVLHGEQYL ELYKPLPRSG 

       430        440        450        460        470        480 
ELKCEAVIAD ILDKGSGIVI VMDVYSYSGK ELICYNQFSV FVVGSGGFGG KRTSEKLKAA 

       490        500        510        520        530        540 
VAVPSRPPDA VLRDTTSLNQ AALYRLSGDS NPLHIDPSFA SIAGFEKPIL HGLCTFGFSA 

       550        560        570        580        590        600 
RHVLQQFADN DVSRFKAIKV RFAKPVYPGQ TLQTEMWKEG NRIHFQTKVQ ETGDIVISNA 

       610        620        630        640        650        660 
YVDLVPTSGV SAQTPSEGGA LQSALVFGEI GRRLKDVGRE VVKKVNAVFE WHITKNGNVA 

       670        680        690        700        710        720 
AKWMELTISF SVSSLLPANA IDLKNGSGEV YQGPAKGSAD TTITISDEDF MEVVLGKLNP 

       730        740        750 
QNAFFSGRLK ARGNIMLSQK LQMILKDYAK L

« Hide

Hide | Top

References

[1]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Lung EMBL AAH72472.1.
+Additional computationally mapped references.

Hide | Top

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		BC072472 mRNA. Translation: AAH72472.1.
IPIIPI00326948.
RefSeqNP_077368.2.
UniGeneRn.2082

3D structure databases

SMRQ6IN39. Positions 3-303, 322-604, 621-751.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ6IN39.

Genome annotation databases

EnsemblENSRNOT00000042599; ENSRNOP00000043755; ENSRNOG00000015840; Rattus norvegicus. [Genome view]
GeneID79244.
KEGGrno:79244.

Organism-specific databases

CTD79244.

Phylogenomic databases

HOVERGENQ6IN39.
InParanoidQ6IN39.
OMANQPMTPE.
PhylomeDBQ6IN39.

Gene expression databases

ArrayExpressQ6IN39.
GenevestigatorQ6IN39.

Family and domain databases

InterProIPR002198. DH_sc/Rdtase_SDR.
IPR002347. Glc/ribitol_DH.
IPR002539. MaoC_deHydtase.
IPR016040. NAD(P)-bd_dom.
IPR003033. SCP2_sterol_bd.
IPR016083. Sterol-binding-like.
[Graphical view]
Gene3DG3DSA:3.40.50.720. NAD(P)-bd. 1 hit.
PANTHERPTHR19410. ADH_short_C2. 1 hit.
PfamPF00106. adh_short. 1 hit.
PF01575. MaoC_dehydratas. 1 hit.
PF02036. SCP2. 1 hit.
[Graphical view]
PRINTSPR00081. GDHRDH.
PR00080. SDRFAMILY.
ProtoNetSearch...

Hide | Top

Entry information

Entry nameQ6IN39_RAT
AccessionPrimary (citable) accession number: Q6IN39
Entry history
Integrated into UniProtKB/TrEMBL: July 5, 2004
Last sequence update: July 5, 2004
Last modified: January 19, 2010
This is version 47 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequences · References · Cross-references · Entry information