Unreviewed, UniProtKB/TrEMBL Q6IMX3 (Q6IMX3_RAT)

Names and origin

Protein names

Submitted name:
    Acyl-Coenzyme A dehydrogenase, C-2 to C-3 short chain EMBL AAH72545.1
Submitted name:
    Acetyl-Coenzyme A dehydrogenase, short chain, isoform CRA_a EMBL EDM13909.1

Gene names

Name:	Acads RGD 620514
ORF Names:	rCG_21797 EMBL EDM13909.1

Organism

Rattus norvegicus (Rat) EMBL AAH72545.1

Taxonomic identifier

10116 [NCBI]

Taxonomic lineage

Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length	414 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level.

General annotation (Comments)

Sequence similarities

Belongs to the acyl-CoA dehydrogenase family.

Ontologies

Keywords
Ligand	FAD RuleBase RU003714V0 Flavoprotein RuleBase RU003714V0
Molecular function	Oxidoreductase RuleBase RU003714V0
Gene Ontology (GO)
Biological process	fatty acid beta-oxidation Traceable author statement. Source: RGD oxidation reduction Inferred from electronic annotation. Source: UniProtKB-KW response to glucocorticoid stimulus Inferred from expression pattern. Source: RGD response to starvation Inferred from expression pattern. Source: RGD
Cellular component	mitochondrial matrix Traceable author statement. Source: RGD
Molecular function	FAD binding Inferred from electronic annotation. Source: InterPro acyl-CoA binding Inferred from direct assay. Source: RGD butyryl-CoA dehydrogenase activity Inferred from direct assay. Source: RGD
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q6IMX3-1 [UniParc]. Last modified July 5, 2004. Version 1. Checksum: 12E30B037207E3FF	FASTA	414	44,968
	10 20 30 40 50 60 MAMAAALLAR AGGSLGRALR ARDWRRLHTV YQSVELPETH QMLRQTCRDF AEKELVPIAA 70 80 90 100 110 120 QLDKEHLFPT SQVKKMGELG LLAMDVPEEL SGAGLDYLAY SIALEEISRG CASTGVIMSV 130 140 150 160 170 180 NNSLYLGPIL KFGSSQQKQQ WITPFTNGDK IGCFALSEPG NGSDAGAAST TAREEGDSWV 190 200 210 220 230 240 LNGTKAWITN SWEASATVVF ASTDRSRQNK GISAFLVPMP TPGLTLGKKE DKLGIRASST 250 260 270 280 290 300 ANLIFEDCRI PKENLLGEPG MGFKIAMQTL DMGRIGIASQ ALGIAQASLD CAVKYAENRH 310 320 330 340 350 360 AFGAPLTKLQ NIQFKLADMA LALESARLLT WRAAMLKDNK KPFTKESAMA KLAASEAATA 370 380 390 400 410 ISHQAIQILG GMGYVTEMPA ERYYRDARIT EIYEGTSEIQ RLVIAGHLLR SYRS

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Tissue: Heart EMBL AAH72545.1.
[2]	"Gene and alternative splicing annotation with AIR." Florea L., Di Francesco V., Miller J., Turner R., Yao A., Harris M., Walenz B., Mobarry C., Merkulov G.V., Charlab R., Dew I., Deng Z., Istrail S., Li P., Sutton G. Genome Res. 15:54-66(2005) [PubMed: 15632090] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: BN EMBL EDM13909.1.
[3]	Mural R.J., Li P.W., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S.H., Dew I., Evans C.A., Ferriera S., Flanigan M., Fosler C., Glodek A., Gu Z., Holt R.A., Jennings D., Kraft C.L., Lu F. , Nguyen T., Nusskern D.R., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Wang Z., Woodage T., Zheng X.H., Zhong F. Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: BN EMBL EDM13909.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	BC072545 mRNA. Translation: AAH72545.1. CH473973 Genomic DNA. Translation: EDM13909.1.
IPI	IPI00231359.
RefSeq	NP_071957.1.
UniGene	Rn.1167
3D structure databases
SMR	Q6IMX3. Positions 30-413.
ModBase	Search...
Protein-protein interaction databases
STRING	Q6IMX3.
Proteomic databases
PRIDE	Q6IMX3.
Genome annotation databases
Ensembl	ENSRNOT00000001556; ENSRNOP00000001556; ENSRNOG00000001177; Rattus norvegicus. [Genome view]
GeneID	64304.
KEGG	rno:64304.
NMPDR	fig|10116.3.peg.8733.
Organism-specific databases
CTD	64304.
Phylogenomic databases
HOVERGEN	Q6IMX3.
InParanoid	Q6IMX3.
OMA	DYLAYSI.
PhylomeDB	Q6IMX3.
Gene expression databases
ArrayExpress	Q6IMX3.
Genevestigator	Q6IMX3.
Family and domain databases
InterPro	IPR006089. Acyl-CoA_DH_CS. IPR006092. Acyl-CoA_DH_N. IPR006090. Acyl-CoA_Oxase/DH_1. IPR006091. Acyl-CoA_Oxase/DH_cen-dom. IPR009075. AcylCo_DH/oxidase_C. IPR013786. AcylCoA_DH/ox_N. IPR009100. AcylCoA_DH/oxidase. IPR013764. AcylCoA_oxidase/DH_1/2_C. [Graphical view]
Gene3D	G3DSA:2.40.110.10. Acyl_CoA_DH/ox_M. 1 hit. G3DSA:1.10.540.10. AcylCoA_DH/ox_N. 1 hit. G3DSA:1.20.140.10. AcylCoA_DH_1/2_C. 1 hit.
Pfam	PF00441. Acyl-CoA_dh_1. 1 hit. PF02770. Acyl-CoA_dh_M. 1 hit. PF02771. Acyl-CoA_dh_N. 1 hit. [Graphical view]
PROSITE	PS00072. ACYL_COA_DH_1. 1 hit. PS00073. ACYL_COA_DH_2. 1 hit. [Graphical view]
ProtoNet	Search...
Other Resources
NextBio	612942.

Entry information

Entry name

Q6IMX3_RAT

Accession

Primary (citable) accession number: Q6IMX3

Entry history

Integrated into UniProtKB/TrEMBL:	July 5, 2004
Last sequence update:	July 5, 2004
Last modified:	February 9, 2010
This is version 52 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)