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Protein

Uncharacterized protein At3g03773

Gene

At3g03773

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

ReactomeiR-ATH-2162123. Synthesis of Prostaglandins (PG) and Thromboxanes (TX).
R-ATH-3371511. HSF1 activation.
R-ATH-3371568. Attenuation phase.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein At3g03773
Gene namesi
Ordered Locus Names:At3g03773
ORF Names:F20H23.30
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

TAIRiAT3G03773.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 150150Uncharacterized protein At3g03773PRO_0000218957Add
BLAST

Proteomic databases

PaxDbiQ6ID70.
PRIDEiQ6ID70.

Expressioni

Gene expression databases

ExpressionAtlasiQ6ID70. baseline.

Interactioni

Protein-protein interaction databases

BioGridi6492. 2 interactions.
STRINGi3702.AT3G03773.2.

Structurei

Secondary structure

1
150
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi7 – 115Combined sources
Beta strandi13 – 208Combined sources
Beta strandi23 – 308Combined sources
Beta strandi36 – 438Combined sources
Turni44 – 474Combined sources
Beta strandi48 – 5811Combined sources
Beta strandi60 – 7920Combined sources
Beta strandi88 – 903Combined sources
Beta strandi99 – 1013Combined sources
Beta strandi103 – 1064Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2KMWNMR-A2-150[»]
ProteinModelPortaliQ6ID70.
SMRiQ6ID70. Positions 2-150.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ6ID70.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini2 – 8988CSPROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the p23/wos2 family.Curated
Contains 1 CS domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG3158. Eukaryota.
ENOG41121RT. LUCA.
HOGENOMiHOG000177563.
InParanoidiQ6ID70.
PhylomeDBiQ6ID70.

Family and domain databases

Gene3Di2.60.40.790. 1 hit.
InterProiIPR007052. CS_dom.
IPR008978. HSP20-like_chaperone.
[Graphical view]
PfamiPF04969. CS. 1 hit.
[Graphical view]
SUPFAMiSSF49764. SSF49764. 1 hit.
PROSITEiPS51203. CS. 1 hit.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q6ID70-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MSRNPEVLWA QRSDKVYLTV ALPDAKDISV KCEPQGLFSF SALGAQGERF
60 70 80 90 100
EFSLELYGKI MTEYRKNVGL RNIIFSIQKE ERSWWTRLLK SEEKPAPYIK
110 120 130 140 150
VDWNKWCDED EEVNSETASD DESAFVNQDS ESSDDDGLLY LPDLEKARNK
Length:150
Mass (Da):17,366
Last modified:July 5, 2004 - v1
Checksum:i79B0F24C9FFA724F
GO
Isoform 2 (identifier: Q6ID70-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     115-117: SET → CKS
     118-150: Missing.

Note: No experimental confirmation available.
Show »
Length:117
Mass (Da):13,741
Checksum:iA40BA375149DFD8B
GO

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei115 – 1173SET → CKS in isoform 2. 1 PublicationVSP_015488
Alternative sequencei118 – 15033Missing in isoform 2. 1 PublicationVSP_015489Add
BLAST

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC009540 Genomic DNA. No translation available.
CP002686 Genomic DNA. Translation: AEE73986.1.
BT014803 mRNA. Translation: AAT41786.1.
BT015020 mRNA. Translation: AAT70471.1.
AY648332 mRNA. Translation: AAT68743.1.
AY648333 mRNA. Translation: AAT68744.1.
AY954843 mRNA. Translation: AAX55169.1.
RefSeqiNP_683525.2. NM_148683.4. [Q6ID70-1]
UniGeneiAt.45139.

Genome annotation databases

EnsemblPlantsiAT3G03773.1; AT3G03773.1; AT3G03773. [Q6ID70-1]
GeneIDi821159.

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC009540 Genomic DNA. No translation available.
CP002686 Genomic DNA. Translation: AEE73986.1.
BT014803 mRNA. Translation: AAT41786.1.
BT015020 mRNA. Translation: AAT70471.1.
AY648332 mRNA. Translation: AAT68743.1.
AY648333 mRNA. Translation: AAT68744.1.
AY954843 mRNA. Translation: AAX55169.1.
RefSeqiNP_683525.2. NM_148683.4. [Q6ID70-1]
UniGeneiAt.45139.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2KMWNMR-A2-150[»]
ProteinModelPortaliQ6ID70.
SMRiQ6ID70. Positions 2-150.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi6492. 2 interactions.
STRINGi3702.AT3G03773.2.

Proteomic databases

PaxDbiQ6ID70.
PRIDEiQ6ID70.

Protocols and materials databases

DNASUi821159.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G03773.1; AT3G03773.1; AT3G03773. [Q6ID70-1]
GeneIDi821159.

Organism-specific databases

TAIRiAT3G03773.

Phylogenomic databases

eggNOGiKOG3158. Eukaryota.
ENOG41121RT. LUCA.
HOGENOMiHOG000177563.
InParanoidiQ6ID70.
PhylomeDBiQ6ID70.

Enzyme and pathway databases

ReactomeiR-ATH-2162123. Synthesis of Prostaglandins (PG) and Thromboxanes (TX).
R-ATH-3371511. HSF1 activation.
R-ATH-3371568. Attenuation phase.

Miscellaneous databases

EvolutionaryTraceiQ6ID70.
PROiQ6ID70.

Gene expression databases

ExpressionAtlasiQ6ID70. baseline.

Family and domain databases

Gene3Di2.60.40.790. 1 hit.
InterProiIPR007052. CS_dom.
IPR008978. HSP20-like_chaperone.
[Graphical view]
PfamiPF04969. CS. 1 hit.
[Graphical view]
SUPFAMiSSF49764. SSF49764. 1 hit.
PROSITEiPS51203. CS. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana."
    Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N., Artiguenave F.
    , Robert C., Brottier P., Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E., Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
    Nature 408:820-822(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "Arabidopsis ORF clones."
    Cheuk R.F., Chen H., Kim C.J., Shinn P., Ecker J.R.
    Submitted (JUN-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
    Strain: cv. Columbia.
  4. "Reconstruction of cDNA sequences for hypothetical genes in Arabidopsis thaliana from 5' and 3' RACE products."
    Xiao Y.-L., Underwood B.A., Moskal W.A. Jr., Torian U., Redman J.C., Wu H.C., Utterback T., Town C.D.
    Submitted (JUN-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2).
    Strain: cv. Columbia.
  5. Underwood B.A., Xiao Y.-L., Moskal W.A. Jr., Monaghan E.L., Wang W., Redman J.C., Wu H.C., Utterback T., Town C.D.
    Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
    Strain: cv. Columbia.
  6. Center for eukaryotic structural genomics (CESG)
    Submitted (OCT-2004) to the PDB data bank
    Cited for: STRUCTURE BY NMR.

Entry informationi

Entry nameiY3377_ARATH
AccessioniPrimary (citable) accession number: Q6ID70
Secondary accession number(s): Q6DSR5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 30, 2005
Last sequence update: July 5, 2004
Last modified: December 9, 2015
This is version 90 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.